Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00035 ATGAGTTCAGATAGCAGGAGTCGAAGCAGGAGCAGAAGCAGGAGCCCACTGGATCGTAAGATCCGGTCTGATCGTTTTTCATATCGTGATGCACCATACAGGAGAGAATCACGTCGGGGTTTCAGTCGAGACAATCTTTGCAAGAATTGCAAGCGGCCAGGCCATTTTGCAAGAGAATGTCCCAATGTGGCAATTTGTCACAATTGTGGTCTGCCTGGGCATATTGCTTCAGAGTGCACAACAAAATCACTATGTTGGAACTGCCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACATGTGGTAAGGCGGGACATCGAGCCAGGGACTGTACAGCTCCTCCCATGCCACCTGGAGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCAGCTGATTGTACTAATGAGAAGGCATGCAACAATTGTAGGAAGACAGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCGGGGCATGTCGCCAGACAGTGTCCCAAGTCCAACGTCCTCGGAGACCGGGGAGACCGAGGCATCAGCAGTGGTGGTGGTAGCGGACGTGGTAGTGGTAGTGGTTATCGAGATGTTGTGTGCAGGAACTGTCAGCAACTTGGCCATATGAGTAGGGATTGCATGGGTCCTTTGATGATCTGCCATAATTGCGGGGGACGTGGTCACCTGGCATACGAATGCCCTTCTGGTCGGTTCATGGATCGTTTTCCTAGGAGGTACTGA 783 50.57 MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPMPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRFPRRY* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 456998 462681 - CsaV3_7G000350.1 Csa07g00035 535598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00035 260 SMART c2hcfinal6 233 249 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 SMART c2hcfinal6 213 229 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 SMART c2hcfinal6 46 62 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 SMART c2hcfinal6 65 81 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 SMART c2hcfinal6 84 100 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 SMART c2hcfinal6 103 119 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 SUPERFAMILY Retrovirus zinc finger-like domains 83 121 IPR036875 GO:0003676|GO:0008270
Csa07g00035 260 ProSiteProfiles Zinc finger CCHC-type profile. 47 62 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 SUPERFAMILY Retrovirus zinc finger-like domains 124 165 IPR036875 GO:0003676|GO:0008270
Csa07g00035 260 Gene3D - 25 81 - -
Csa07g00035 260 ProSiteProfiles Zinc finger CCHC-type profile. 66 79 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 SUPERFAMILY Retrovirus zinc finger-like domains 38 82 IPR036875 GO:0003676|GO:0008270
Csa07g00035 260 ProSiteProfiles Zinc finger CCHC-type profile. 234 249 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 Gene3D - 208 251 - -
Csa07g00035 260 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 PANTHER OS10G0545300 PROTEIN 1 260 - -
Csa07g00035 260 Gene3D - 82 101 - -
Csa07g00035 260 SUPERFAMILY Retrovirus zinc finger-like domains 205 251 IPR036875 GO:0003676|GO:0008270
Csa07g00035 260 Gene3D - 147 198 - -
Csa07g00035 260 Gene3D - 102 146 - -
Csa07g00035 260 PANTHER - 1 260 - -
Csa07g00035 260 ProSiteProfiles Zinc finger CCHC-type profile. 104 117 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 ProSiteProfiles Zinc finger CCHC-type profile. 130 145 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 ProSiteProfiles Zinc finger CCHC-type profile. 214 227 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 ProSiteProfiles Zinc finger CCHC-type profile. 85 100 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 Pfam Zinc knuckle 66 80 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 Pfam Zinc knuckle 233 249 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 Pfam Zinc knuckle 213 227 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 Pfam Zinc knuckle 46 62 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 Pfam Zinc knuckle 167 183 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 Pfam Zinc knuckle 129 145 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 Pfam Zinc knuckle 103 118 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 Pfam Zinc knuckle 85 100 IPR001878 GO:0003676|GO:0008270
Csa07g00035 260 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00035 K09250 CNBP; cellular nucleic acid-binding protein - csv:101213305 530.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01713 Csa-Chr3:12826760 Csa07g00035 Csa-Chr7:456998 1.07E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g39 . . . . . Bpe12g00094 . . Cmo19g00702 . . . . . . Cpe04g00102 Cpe15g00562 Bhi05g01259 . . . . . . Cla02g00487 Cam02g0496 Cec02g0497 Cco02g0502 Clacu02g0500 Cmu02g0495 Cre02g0828 . . . . . Csa07g00035 . Cme01g01346 Blo04g00539 Blo13g00534 Bda15g01066 Bda14g00579 Bpe15g00842 . Bma03g00573 Bma08g00782 . . . . Cma19g00691 . . . . . . . . . . . . . . . . . . . . Chy01g00746 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004531 3 4 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00035 Csa_Chr07 FPKM 16.949715 19.745966 2.6276 2.780836 8.460213 8.617263 8.813958 0.0 0.191387 0.199766