Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00040 ATGGCGATGGCGCAGTGGTTCGGCGCAGTAGCTAGGGGAGTTATGGCGGCGGAGAGACGTTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTCCCGATTCTCTGTGGACGAGGTGACAAGAGGACGAAGAGAGGGAAGAGATTCAAAGGCTCCTACGGAAACGCTAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGGGTTCAATTGCCTGCAACTCTGGGATTGATTTTGAGAAGCTTGCATTACAAATTGATGTTTAG 285 50.88 MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARPKKEKKIQRIKDKIEGSIACNSGIDFEKLALQIDV* 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 493878 494408 - CsaV3_7G000400.1 Csa07g00040 535603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00040 94 Pfam Ribosomal protein S31e 32 65 IPR030826 GO:0005840
Csa07g00040 94 PANTHER 30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC 1 74 IPR044695 -
Csa07g00040 94 PANTHER 30S RIBOSOMAL PROTEIN S31, MITOCHONDRIAL 1 74 - -
Csa07g00040 94 TIGRFAM ribo_THX: ribosomal small subunit protein bTHX 39 62 IPR030826 GO:0005840
Csa07g00040 94 MobiDBLite consensus disorder prediction 44 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00040 K19033 PSRP4, RPS31; 30S ribosomal protein S31 - csv:101214509 137.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01610 Csa-Chr4:15474054 Csa07g00040 Csa-Chr7:493878 2.88E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g48 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1206 . . Csa07g00040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00741 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009347 0 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 0 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00040 Csa_Chr07 FPKM 80.612282 90.841797 23.750572 27.095005 13.029401 11.239349 12.476659 110.718842 108.114632 111.154808