Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00049 ATGGATGATGGCCGTCAACATGAAAACGGGAGGCACAAACTAGATTATTTCCGAGGGAGCTCCTCACCATGGAATATGGTGCCCCCAAATCATGTAAAGGAACCAAATGCCTTGGTCATGAATAAGAAGATCATGTCCATTATAGCCGAGAGAGATGCTGCTATTCGGGAACGGAATTTAGCACTATCTGAGAAGAAGGAGGCATTGGCTGCACGAGATGAGGCTCTCCGGCAGCGTGACGAGGCACTTGTACAGCGTGATTCTGCGTTAATGGAAAGGGACAATGCCCTTGCTGCCCTTGAAATTCGTGACAATGCTTCTAACTTCCCTCTTGGTGGTGGGGTCCAACGCAAAACAAAGCGATTACACCATTTATCTAATCATATGCCGAACATATCTGAAACTTCCTATGGTACAAAAGACGTGCATATAACTGATGCCTTTCCAATTACAGTTATAGCTTCTGAAGCTGTTAAGTCTCAGCAGGGAAAGCGAGCGAAGGATAACAAGTTAGTTTCATCAAAGACATCAAGGCCGCCAAGGAAGAAGGTTGGCGAAGATTTGAATAGACATGCTGCCACCGATGGCACAAAATACAGAACTGATTGGGATGGTCAGGACGTGGGTTTGAATCTTGTAAGTTTTGATGATTCTTCTATGCCAGCACCAATTTGTTCGTGTACTGGGTTCGCAAGACAGTGCTACAAATGGGGAAATGGGGGTTGGCAATCGTCTTGTTGTACCACCCATATGTCCATGTATCCACTTCCACATTTGGAAAACAAACGCCATGCTCGTATGGGCGGGCGGAAAATGAGTGGAAGTGTTTTTACAAAATTGCTTAGTCGGCTAGCAGCAGCAGGTCATGATCTGTCGGTACCAGTGGATCTTAAGGACCACTGGGCAAGACACGGTACAAATCGCTACATAACAATCAGGTAG 942 45.97 MDDGRQHENGRHKLDYFRGSSSPWNMVPPNHVKEPNALVMNKKIMSIIAERDAAIRERNLALSEKKEALAARDEALRQRDEALVQRDSALMERDNALAALEIRDNASNFPLGGGVQRKTKRLHHLSNHMPNISETSYGTKDVHITDAFPITVIASEAVKSQQGKRAKDNKLVSSKTSRPPRKKVGEDLNRHAATDGTKYRTDWDGQDVGLNLVSFDDSSMPAPICSCTGFARQCYKWGNGGWQSSCCTTHMSMYPLPHLENKRHARMGGRKMSGSVFTKLLSRLAAAGHDLSVPVDLKDHWARHGTNRYITIR* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 550696 554122 + CsaV3_7G000490.1 Csa07g00049 535612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00049 313 Pfam GAGA binding protein-like family 1 313 IPR010409 -
Csa07g00049 313 MobiDBLite consensus disorder prediction 161 193 - -
Csa07g00049 313 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 313 - -
Csa07g00049 313 PANTHER - 1 313 IPR010409 -
Csa07g00049 313 SMART GAGA_bind_2 1 313 IPR010409 -
Csa07g00049 313 MobiDBLite consensus disorder prediction 159 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00049 - - - csv:101215473 637.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01290 Csa-Chr5:13700427 Csa07g00049 Csa-Chr7:550696 5.33E-44 dispersed
Csa05g01291 Csa-Chr5:13703373 Csa07g00049 Csa-Chr7:550696 1.35E-44 dispersed
Csa02g02118 Csa-Chr2:19227774 Csa07g00049 Csa-Chr7:550696 1.18E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g55 . . . . . Bpe12g00098 . . Cmo19g00710 . . . . . Sed11g1487 Cpe04g00095 Cpe15g00568 Bhi05g01776 Tan02g2047 Cmetu03g1142 . . . . Cla02g00476 Cam02g0483 Cec02g0485 Cco02g0490 Clacu02g0486 Cmu02g0481 Cre02g0816 Cone12ag1196 Cone8ag1244 . . . Csa07g00049 . Cme01g01320 . Blo13g00531 Bda15g01061 . . . . Bma08g00777 . . . . Cma19g00701 . Car19g00543 . . . . . . . . . . . . . . . . Lsi11g01148 . Chy01g00732 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01290 . 1 280 BBR/BPC Transcription factor family AT2G01930 55.3 6.6e-80 294.3
Csa05g01291 . 1 277 BBR/BPC Transcription factor family AT2G01930 51.7 2.6e-68 255.8
Csa05g01290 . 161 280 BBR/BPC Transcription factor family AT2G35550 60.0 1.1e-40 163.7
Csa05g01291 . 158 277 BBR/BPC Transcription factor family AT2G35550 58.3 1.8e-40 162.9
Csa02g02118 . 224 339 BBR/BPC Transcription factor family AT2G35550 59.5 1.7e-38 156.4
Csa07g00049 . 207 314 BBR/BPC Transcription factor family AT2G35550 59.3 4.2e-37 151.8
Csa02g02118 . 232 339 BBR/BPC Transcription factor family AT1G68120 57.4 3.9e-37 152.1
Csa07g00049 . 1 314 BBR/BPC Transcription factor family AT2G21240 62.7 3.3e-82 302.0
Csa02g02118 . 1 339 BBR/BPC Transcription factor family AT2G21240 51.6 2.2e-62 236.1
Csa07g00049 . 1 314 BBR/BPC Transcription factor family AT4G38910 59.6 1.8e-69 259.6
Csa02g02118 . 1 339 BBR/BPC Transcription factor family AT4G38910 50.1 3.2e-58 222.2
Csa02g02118 . 88 339 BBR/BPC Transcription factor family AT5G42520 61.7 4.6e-81 298.1
Csa05g01290 . 161 280 BBR/BPC Transcription factor family AT2G35550 60.0 1.1e-40 163.7
Csa05g01291 . 158 277 BBR/BPC Transcription factor family AT2G35550 58.3 1.8e-40 162.9
Csa02g02118 . 224 339 BBR/BPC Transcription factor family AT2G35550 59.5 1.7e-38 156.4
Csa07g00049 . 207 314 BBR/BPC Transcription factor family AT2G35550 59.3 4.2e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006274 1 3 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32234 PF06217 GAGA_bind 2.20E-99 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00049 Csa_Chr07 FPKM 34.087925 34.04493 33.077972 32.544872 39.666763 41.297363 39.222565 36.543438 35.027515 33.839088