Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00051 ATGGGTGATACTGAAGATGCTCGTACTGATAACTTGCGAAATCTTCAATGTTCGTTTGGAACATCTTCATCTTCTGCTTTAAAGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGACCTGCTCTCAAGGCCGTCCACAGCATTTCCAGTCGAATTTTCTTGGGGATAATAATAGACGAATTGGGATACCTCCTTGTCCTAACTCGCCGCAGGTCCCACCAATCTCACCGTATTCTCAGATCCCGGTATCTCGTCCGATGAACCAACATAGTTATAATTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGTCCCCATTTCGTGATTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCGGATACGTCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCTTCACCTTATACGAGGGCCAATTCTTCGAAGATGAGTGATGCTTTACCTCCTCGTAAAGCCCATAGGCGGTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCACCTCCTGTTCTCCCTTTTAGTGGCTCAGGTGGATTGGAGCGATCAACAAGTAGCAAAGAGAATGCGGGGATATTTAAGCAAGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCATTGATAACCATATGGAAGGAATGGGTGAAAAGAAGTCTGAAGGGGACACTGTGGATGATTTGTTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCAGTGACTAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGAGGCAGTGGTACAAAGACAGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTTAACGAAAGTGGGGATAACTCTCAAATGCCTGGATTGAATTCGTCTGCCGAGAAGAGGGAAGGGATTAAACGGACTGCTGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTATCTCTATGGATAGCTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCACCCAAAATGCCTCCTACACCACCCGGCATTCGTCCCGGGCAACTTTCTTCAAACAACCTAGTTGACGGTAATTCAACTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTAGCTGAGATTGCACTAACTGATCCCAAACGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCAAAAGAACGAAAAATGCGCTATATATCTGAGTTGGAACACAAGGTTCAGACGCTTCAGACAGAAGCTACCACGCTGTCTGCCCAACTCACACTTCTGCAGCGAGACTCAGTCGGACTTACAAACCAGAATAACGAGCTGAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTACGGGATGCTCTAAACGAAGCGTTAACTGCTGAGGTTCAGAGATTGAAACTTGCTACAACCGATATAAACGCACAATCTCATCCCTCAAATGGGGTAATGGCTCAATCTTCTATGAACCACCATGGACTCCAGCTTCAGCAGCACCAACAACAGCAACATATGCAGCAGAATGGAAGTGCAGCCACAAAACCAGAATCCAACCAATAA 1692 44.68 MGDTEDARTDNLRNLQCSFGTSSSSALKHHFSMDQLKISQMTCSQGRPQHFQSNFLGDNNRRIGIPPCPNSPQVPPISPYSQIPVSRPMNQHSYNSVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMSDALPPRKAHRRSNSDIPFGLSSMIQSPPVLPFSGSGGLERSTSSKENAGIFKQASQFVKREPSLEKSIDNHMEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSVTNDKNGHENREDLDSRGSGTKTGGESSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTDINAQSHPSNGVMAQSSMNHHGLQLQQHQQQQHMQQNGSAATKPESNQ* 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 573566 578114 + CsaV3_7G000510.1 Csa07g00051 535614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00051 563 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700|GO:0006355
Csa07g00051 563 MobiDBLite consensus disorder prediction 275 289 - -
Csa07g00051 563 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700|GO:0006355
Csa07g00051 563 Gene3D - 420 472 - -
Csa07g00051 563 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700|GO:0006355
Csa07g00051 563 MobiDBLite consensus disorder prediction 68 82 - -
Csa07g00051 563 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 76 551 - -
Csa07g00051 563 MobiDBLite consensus disorder prediction 270 342 - -
Csa07g00051 563 MobiDBLite consensus disorder prediction 355 383 - -
Csa07g00051 563 MobiDBLite consensus disorder prediction 290 320 - -
Csa07g00051 563 MobiDBLite consensus disorder prediction 151 165 - -
Csa07g00051 563 MobiDBLite consensus disorder prediction 58 212 - -
Csa07g00051 563 SMART brlzneu 417 481 IPR004827 GO:0003700|GO:0006355
Csa07g00051 563 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700|GO:0006355
Csa07g00051 563 MobiDBLite consensus disorder prediction 83 115 - -
Csa07g00051 563 Coils Coil 437 492 - -
Csa07g00051 563 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 76 551 - -
Csa07g00051 563 MobiDBLite consensus disorder prediction 518 563 - -
Csa07g00051 563 MobiDBLite consensus disorder prediction 181 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03682 Csa-Chr3:32767388 Csa07g00051 Csa-Chr7:573566 4.37E-06 dispersed
Csa07g00051 Csa-Chr7:573566 Csa07g01423 Csa-Chr7:14447945 2.84E-48 dispersed
Csa07g00051 Csa-Chr7:573566 Csa07g00052 Csa-Chr7:584738 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32235 PF00170 bZIP_1 8.70E-09 CL0018 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00051 - - csv:101215703 1041.57