Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00052 ATGGGTGATACTGAAGATGTTAACACTGAGAACATGCGAAATCATCTTCAATGTTCGTATGGAGTATCGTCTTCTTCAGCTGGAAATCTTCCTTTCTCGATGGATCAACTTAAAATTTCCCAAATGAACTCTTCACAAATCCGTCCACAGCACTTCCATTCAAATTTTCTTGGGGATAATAGTAGAAGGATTGGGATACCTCCTAGTCCCAACTCACCGCAGATCCCACCAATTTCACCTTATTCTCAGATCCCGATCTCGCGTCCGATGAATCAGCAAAACTATAACCCAGTACCTACTCATTCTCGATCGTTGTCTCAGCCTTCTTTTTTCTCTCTTGATTCTTTGCCCCCTTTAAGCCCATCTCCATTTCGTGAATCCCCAACCACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAATAGTTCACATTCTTTGTTGCCTCCTTCACCTTATATGAGAGTCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCTCATAGGCGGTCTAATAGTGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTTCCATTCAACAGCTCTGGTGGATTGGAACGATCAACAAGTAGTAAAGAGAATGCTGGCTTATTAAAGCCCAGTAGCCAGTTTGTTAAAAGAGAACATAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGTGAGAGGAAATCTGATGGGGACAGTGTGGACGACTTATTTTCTGCTTATATGAATTTGGATCATATTGATTTGTTCAACTCTTCTGGGACTAACGACAAGAATGGTCATGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAAATGGCGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGCGGGGATAGCGCCCAAATGCCTGGATTGAATTCGTCTGCTGAGAAGAGGGAAGGGATCAAACGGACCGCAGGGGGAGATATTGCTCCGACTACCAGACATTATCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCCCCCAAAATGCCTCCTACACCACCTGGTGTCCGTCCGGGACAACTTTCTTCAAACAACTTAGTTGATGGTAATTCTGCTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAATTGAAGAAAATTATGGCAAATGACAAACTTGCCGAGATTGCTTTGACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCCCGATCGAAGGAACGTAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAACTCACACTTTTGCAGAGAGATTCAGTTGGACTTACAAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTTAACGAAGCCTTAACTGCGGAGGTTCAGAGATTGAAACTCGCTACAACGGAGCTAAACGCGCAATCTCATCAGAATGGGGTAATGTCCCAAGCTGCCATCAATCACCATAGCCTCCAGCTTCAACTTCAGCACCACCAACAACAGCAACATATGCAACAGAATGGAAGTGCAACCACAAAACCAGAATCCAACCAATAA 1701 43.8 MGDTEDVNTENMRNHLQCSYGVSSSSAGNLPFSMDQLKISQMNSSQIRPQHFHSNFLGDNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRVNSSKMGDSLPPRKAHRRSNSDIPFGLSSMIQPSPLLPFNSSGGLERSTSSKENAGLLKPSSQFVKREHSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDHIDLFNSSGTNDKNGHENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHQNGVMSQAAINHHSLQLQLQHHQQQQHMQQNGSATTKPESNQ* 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 584738 588713 + CsaV3_7G000520.1 Csa07g00052 535615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00052 566 MobiDBLite consensus disorder prediction 357 385 - -
Csa07g00052 566 MobiDBLite consensus disorder prediction 541 566 - -
Csa07g00052 566 MobiDBLite consensus disorder prediction 69 83 - -
Csa07g00052 566 Gene3D - 422 474 - -
Csa07g00052 566 MobiDBLite consensus disorder prediction 269 344 - -
Csa07g00052 566 MobiDBLite consensus disorder prediction 182 218 - -
Csa07g00052 566 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 77 556 - -
Csa07g00052 566 Coils Coil 439 494 - -
Csa07g00052 566 Pfam bZIP transcription factor 423 477 IPR004827 GO:0003700|GO:0006355
Csa07g00052 566 MobiDBLite consensus disorder prediction 290 321 - -
Csa07g00052 566 SUPERFAMILY Leucine zipper domain 423 474 IPR046347 GO:0003700|GO:0006355
Csa07g00052 566 MobiDBLite consensus disorder prediction 225 250 - -
Csa07g00052 566 MobiDBLite consensus disorder prediction 84 116 - -
Csa07g00052 566 MobiDBLite consensus disorder prediction 51 250 - -
Csa07g00052 566 Coils Coil 502 522 - -
Csa07g00052 566 CDD bZIP_plant_RF2 424 473 IPR044759 GO:0003700|GO:0006355
Csa07g00052 566 SMART brlzneu 419 483 IPR004827 GO:0003700|GO:0006355
Csa07g00052 566 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 421 484 IPR004827 GO:0003700|GO:0006355
Csa07g00052 566 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 77 556 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00532 Csa-Chr6:4513114 Csa07g00052 Csa-Chr7:584738 2.72E-51 dispersed
Csa07g00052 Csa-Chr7:584738 Csa07g01423 Csa-Chr7:14447945 3.17E-48 dispersed
Csa07g00051 Csa-Chr7:573566 Csa07g00052 Csa-Chr7:584738 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32236 PF00170 bZIP_1 7.50E-09 CL0018 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00052 - - csv:101216189 1007.28