Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00067 ATGCAGACTAGAGACATTTTTCTCACCTTCCATTGCTATTGTACTCGGAAGGATATTCAATGTCTTGATATTATATTGGAAGACACCGATATAGTGAAAGCATTAACTGAATACGTATCGTACGCTGCAATCGAGACCTTGGTGCTCGGGGCTCCTTCGAGACATGGATTTATTAGGTTTAAGTCATCGAGCATGGGTAGTAGCGTGTCAAAAGGAGCACCGGATTTCTGCACTGTATATGTCATCTCGAAGGGGAAGGTGTCATCAGTGAAGAATGCATCTCGCTCAGCTCCCTTCACTTCCCCTCTACTAGACCGTTTACAGAAGTTATCTAAGCCGATCGTAAAGGGATCAATCACTCCTCGACATAAGTTCAATTTGAGAGATAGGACATCATTCAAGCCTCGCAGCTTCCAAGATGAAACAATCAAGTCACCTTACTCTCACGGAGGAGAGAGAACTTGTATCTCGAAATTTAGTGGGGGGTTCTCTGAGTCAGAATCCGACATATCCTTTATAAGCTCTGGCAGACCAAGCACAGATCGTTCTTCTTCTGTTGCATTTGACTACTCTGATTCAGGTCCCCCACGATTTTCAACCAGCTCAGAGCATAGCTTTACATCTCTACCATTTAAACCAAAGTGGGCAGATCTCAGCAATCTCAATGATTTCTCATCAGTTTCAGATGAGAGCTGCAGGACATCATGTTCTTGGTCATCTCAGAACTTGGATGAAGTAGAACTTGAAATGAGGAGGCTGAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCATGTAAAGAAGCACTGACAGCAAAGCAGAAGGCAATGGAACTAAATAATTGGAGACGTGAAGAAGAACAAAAACTAGAAGAGGCACGGCTTGCACAAGAAGCAGCAATGGCTATTGCAGAGCAGGAGAGAGCTAGATGCAGAGCAGCGATGGAAGCAGCTGATGCAGCCAAGAGAATTGCAGAGTTAGAATCACATAAAAGGGCAAATCTGGAGATGAAAGCAGTTAAAGAGGCAGAGGAAATGCAGAAAGCATTGAAAAATCTTGCACAAAGCGACATCAGATACAGGAGATATTCAATTGAGGAGGTTGAATCGGCGACGGAACATTTTGCACAATCTCGAAAGATTGGGGAAGGAGGTTATGGACCTGTCTTTCGTTGTCGTCTTGATCACACATCAGTTGCAGTCAAGGTTTTGCGTCCTGACGCAACTCAAGGAAGGACACAGTTTCAGCAAGAGATTGATATACTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTAGGAGCATGCCCTGAATATGGCATTCTAGTTTATGAGTACATGTCCAATGGAAGTTTGGAGGATCGACTCTTTCGAAAGGGTAACACCCCTGTTATTCCTTGGCAATTGAGGTTTCGAATTGCTGCCGAGATTGCTACTGGCCTTCTGTTTCTCCACCAGACAAAGCCTGAGCCATTGGTGCACCGTGATCTCAAGCCAGCTAACATATTGCTTGACCACAACTATGTTTCCAAGATTAGTGACGTTGGTTTGGCTAGACTTTTACCTGCTGTGGCTGAAAATGTAACACAATGCTACGTGACTTCGGCCGCTGGAACTTTCTGCTATATAGACCCTGAGTATCAACAAACTGGAATGCTTGGGGTTAAATCTGATGTGTATTCACTAGGAATCATGTTGCTTCAACTAATTACAGCTAAGCCGGCCATGGGGTTGGCTCACCATGTTGCTCGTTCTATCGAGAAGGGGACTTTTCAGGAGTTTCTGGACCCAGCTGTGGTTGATTGGCCAGTGGAACAAACACTTTGCTTTGCAAAATTAGCACTTGAATGTGCAGAACTTCGGCGAAAGGACCGACCAGATCTTGCCAGTGTTGTGTTGCCCGAACTTGAAAAATTGAGAGAATTTGGTGAAGAGATGATGGAGCACATGGAGTCAAGGGATAGTAGTGGATCGATAAGCAGTTTTAGCCATCCCTCAACGGAGCAGGACGTAATGAGCGACCCACAATTGATGATGATTTCAGAAAGTTCCAAGAGCCCGTCTAGTATATCATCACAGGTAGAAGAAGAATGA 2103 44.41 MQTRDIFLTFHCYCTRKDIQCLDIILEDTDIVKALTEYVSYAAIETLVLGAPSRHGFIRFKSSSMGSSVSKGAPDFCTVYVISKGKVSSVKNASRSAPFTSPLLDRLQKLSKPIVKGSITPRHKFNLRDRTSFKPRSFQDETIKSPYSHGGERTCISKFSGGFSESESDISFISSGRPSTDRSSSVAFDYSDSGPPRFSTSSEHSFTSLPFKPKWADLSNLNDFSSVSDESCRTSCSWSSQNLDEVELEMRRLKLELKQTMEMYSTACKEALTAKQKAMELNNWRREEEQKLEEARLAQEAAMAIAEQERARCRAAMEAADAAKRIAELESHKRANLEMKAVKEAEEMQKALKNLAQSDIRYRRYSIEEVESATEHFAQSRKIGEGGYGPVFRCRLDHTSVAVKVLRPDATQGRTQFQQEIDILSCIRHPNMVLLLGACPEYGILVYEYMSNGSLEDRLFRKGNTPVIPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVSKISDVGLARLLPAVAENVTQCYVTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLITAKPAMGLAHHVARSIEKGTFQEFLDPAVVDWPVEQTLCFAKLALECAELRRKDRPDLASVVLPELEKLREFGEEMMEHMESRDSSGSISSFSHPSTEQDVMSDPQLMMISESSKSPSSISSQVEEE* 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 683039 689383 - CsaV3_7G000670.1 Csa07g00067 535630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00067 700 PANTHER OS02G0152300 PROTEIN 2 679 - -
Csa07g00067 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Csa07g00067 700 CDD STK_N 2 85 - -
Csa07g00067 700 Gene3D Phosphorylase Kinase; domain 1 342 449 - -
Csa07g00067 700 ProSiteProfiles Protein kinase domain profile. 377 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00067 700 Pfam Protein kinase domain 378 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00067 700 Coils Coil 243 263 - -
Csa07g00067 700 SUPERFAMILY Protein kinase-like (PK-like) 359 635 IPR011009 -
Csa07g00067 700 MobiDBLite consensus disorder prediction 162 188 - -
Csa07g00067 700 Gene3D Transferase(Phosphotransferase) domain 1 450 663 - -
Csa07g00067 700 PANTHER BNAA05G18880D PROTEIN 2 679 - -
Csa07g00067 700 Coils Coil 334 358 - -
Csa07g00067 700 Coils Coil 281 309 - -
Csa07g00067 700 SMART serkin_6 377 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00067 700 MobiDBLite consensus disorder prediction 656 700 - -
Csa07g00067 700 MobiDBLite consensus disorder prediction 650 700 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02310 Csa-Chr2:20598002 Csa07g00067 Csa-Chr7:683039 0 dispersed
Csa07g00067 Csa-Chr7:683039 Csa07g02376 Csa-Chr7:21915512 0 dispersed
Csa07g00067 Csa-Chr7:683039 Csa03g04417 Csa-Chr3:38540278 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78454 PF00069 Pkinase 4.00E-40 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00067 - - csv:101202855 1247.65