Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00071 ATGGGAATTCATTTGACAGGAATAGCAAATGCAAAGCAAAAGTTACAAAGAACATTCTCAGGGAAATACGGGATTGGATCGGCGGTGACGACGAATAATGTTCCTAAAGGACATTTTGCAGTTTATGTAGGAGAAACACAGAAGAAGAGGTTTGTAGTTCCAATATGGTACCTGAATCATCCATTGTTTAAGGATTTGTTAAACCTTGCGGAAGAGGAATTTGGATTCGATCATCCAATGGGTGGACTTACGATTCCTTGCACCGAAGATTACTTCATCAGCTTAACTTCAGCCCTGAATTGTTCATAA 309 39.48 MGIHLTGIANAKQKLQRTFSGKYGIGSAVTTNNVPKGHFAVYVGETQKKRFVVPIWYLNHPLFKDLLNLAEEEFGFDHPMGGLTIPCTEDYFISLTSALNCS* 103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 719059 720050 + CsaV3_7G000710.1 Csa07g00071 535634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00071 102 Pfam Auxin responsive protein 28 98 IPR003676 GO:0009733
Csa07g00071 102 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 3 102 - -
Csa07g00071 102 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 3 102 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00071 K14488 SAUR; SAUR family protein - csv:101203821 215.312
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01345 Csa07g00071 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02121 Csa-Chr2:19261263 Csa07g00071 Csa-Chr7:719059 4.00E-22 dispersed
Csa07g00063 Csa-Chr7:672970 Csa07g00071 Csa-Chr7:719059 2.00E-37 dispersed
Csa07g00065 Csa-Chr7:678351 Csa07g00071 Csa-Chr7:719059 8.48E-35 dispersed
Csa07g00071 Csa-Chr7:719059 Csa02g01344 Csa-Chr2:12958005 4.70E-37 dispersed
Csa07g00070 Csa-Chr7:712830 Csa07g00071 Csa-Chr7:719059 1.66E-27 tandem
Csa02g01345 Csa-Chr2:12960837 Csa07g00071 Csa-Chr7:719059 3.81E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g84 . . . . . Bpe12g00106 . . . Cmo11g01717 Cma02g00337 Cma20g00777 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00456 Csa07g00071 . . . . Bda15g01051 . . . . . Sed01g0233 . Cmo20g00776 Cma11g01404 . . . . . Bhi10g01905 Tan05g1204 . . . . . . . . . . . . Lsi11g01173 Csa02g01345 . Cme11g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00071 Csa_Chr07 FPKM 26.372093 35.540649 36.591351 37.043415 21.28754 18.640337 28.367571 19.893547 17.732006 14.149499