Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00077 ATGAATGGAGCTTTTGCAACCGAACAGGGGAATTGCTCGTTGTTCAAATTTGACATCCCACATTCCTGTGAGGATAGCCCTGTCATTCTTGATCTCATGCCGGAGGCATCACCGGAGAACAGGTCGGAAGGTTGTTGCCGCAGTGGGGTTCTTTCTGCTTGGGCTGTGGATCCTTCCAAGTCTTTCTCTTCGTTTGAGATCTCAGTGGGGAGCACGGACGAAGATGGCAATGAGCAACCACCCGTCAATATTACTCTCATGGCACCTGGTCCTGGTTACACTTGCAGCCCGTTTTTGGACTCTAGTCCAACTATTTCTTCTGTAATTGATGGCAAAAGAGAAGTTCAGGTTTTCAGAACTTGGAAATCAACATGTACTTACTCCATATTTGTGGATAACAAGACACCAGTCTGTTGTGTCTCACTCTCAGCGTTTTACAATCCCTCCATCACACCTTGCCCTTCATGCAGCTGTGGATGCAGAAAAGCAAGCAAAAGTTCTGTTCAATGTACAAGAGACGAATACCAGTTGTCATCCACGGATTCTGCTACTAATCTTTCCTCCGTACGGTGCTCAGATCACATGTGCCCGGTTCGAGTGCATTGGCATGTTAAGACAAACTATATCAACCATTGGAGAGTGAAACTCACAGTTTCCAACTACAACTATAACAGAAACTACTCAAACTGGAACATCCTAGTGCAGCATCCAGGATTTAGCCAATCAACAGAAGCATTTAGTTTCAATAGATCGCAACTTCCATCCTTCAGATTTGGGGATGAGTTGGCCCTCTTTTGGGGCATAGAGGATTTCAACACAGAGCTTGTGCAGTCAACTGAGAGCAATATGGGGTATGTGACGACAGATGTTCTTCTTGAGAAAGATTTGGAATCATTCACATTAAGCAATGGTTGGGCATTTCCAAGAAGAGTATATTTCAATGGAGATAACTGCCATATGGCTTTACCAGATACCTTCCCAATGCTACCAAATGGGAATCCTAAACAAAGCCTCTCACTTTACCTCTTCATTCTTCTCTTCTTTCTTGAACTTTTTGTTTTGGTGAAAGTATAG 1074 43.85 MNGAFATEQGNCSLFKFDIPHSCEDSPVILDLMPEASPENRSEGCCRSGVLSAWAVDPSKSFSSFEISVGSTDEDGNEQPPVNITLMAPGPGYTCSPFLDSSPTISSVIDGKREVQVFRTWKSTCTYSIFVDNKTPVCCVSLSAFYNPSITPCPSCSCGCRKASKSSVQCTRDEYQLSSTDSATNLSSVRCSDHMCPVRVHWHVKTNYINHWRVKLTVSNYNYNRNYSNWNILVQHPGFSQSTEAFSFNRSQLPSFRFGDELALFWGIEDFNTELVQSTESNMGYVTTDVLLEKDLESFTLSNGWAFPRRVYFNGDNCHMALPDTFPMLPNGNPKQSLSLYLFILLFFLELFVLVKV* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 752506 756602 - CsaV3_7G000770.1 Csa07g00077 535640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00077 357 PIRSF COBRA 1 357 IPR006918 GO:0010215|GO:0031225
Csa07g00077 357 PANTHER COBRA-LIKE PROTEIN 1 349 - -
Csa07g00077 357 Pfam COBRA-like protein 1 128 IPR006918 GO:0010215|GO:0031225
Csa07g00077 357 PANTHER PROTEIN COBRA 1 349 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00077 - - - csv:101204550 706.057
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01017 Csa-Chr4:7962730 Csa07g00077 Csa-Chr7:752506 6.17E-95 dispersed
Csa04g01018 Csa-Chr4:7964202 Csa07g00077 Csa-Chr7:752506 3.88E-100 dispersed
Csa07g00077 Csa-Chr7:752506 Csa01g00340 Csa-Chr1:2128397 6.17E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g92 . Blo15g00345 . . Bpe07g00746 Bpe12g00108 Bma05g00386 . . . . . . . . . . Bhi05g01751 . . . . . . . . . . . . . . . . . . Csa07g00077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008827 2 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 0 1 1 0 2 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00077 Csa_Chr07 FPKM 7.701406 7.036602 5.143242 5.299984 18.403212 17.936029 17.897375 3.104705 2.714237 3.283133