Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00078 ATGTCGAATTCCTCTTCGAACATGCCCCAGAATGGGAATGTTAAAAACAATGATACGTTATTCACAGTGGATGAGATTGAAGAAAGTGAGTTTTCGAAGCTATTGGATAGGCCAAGGCCGTTGAACATGGAGAGACAGAGGTCGTTCGATGAAAGATCGCTTGGGGATTTGGCGATTGGTTTTTCTCCACGGTTATCATCGAGAGTTTCTTCAGAAAACTTTGGTCGATTGAGTGATAATTACGATCATTCTCCATCGCCGGGTAGAAAATCGGATTTCAATACTCCAAGATCACACACTGGATTCGAGCAGCATCCTATGGTGGCAGAAGCTTGGGAAGCTTTGAGGCGTTCGTTGGTCTATTTCCGTGGCCAGCCAGTTGGTACTATTGCGGCGTTGGACAGTACTGAAGAAAATCTTAACTATGATCAAGTGTTTGTAAGAGACTTCGTCCCAAGTGCGTTTGCTTTTCTAATGAATGGGGAGCCTGAAATAGTAAAGAACTTTATCCTAAAAACTCTTCGGCTTCAGTCATGGGAGAAAAAGATTGATAGATTCCAGCTTGGAGAAGGGGTGATGCCTGCTAGTTTCAAAGTTCTTCATGATCCAGTGAGGAACACTGAAACTTTAATTGCAGATTTTGGAGAGAGTGCAATAGGAAGAGTTGCTCCTGTTGACTCTGGATTTTGGTGGATTATACTGCTTAGAGCATACACAAAGTCCACTGGTGACAGTTCATTGGCTGAACTACCAGAATGCCAAAAGGGAATGCGCCTTATTTTGAGTCTGTGTCTTTCAGAAGGTTTTGACACATTCCCAACCCTTCTCTGTGCCGATGGATGCTGCATGATTGATCGACGAATGGGTGTATATGGCTACCCAATTGAAATTCAGGCACTTTTCTTTATGGCTTTAAGGTGTGCTTTGATTTTGCTTAAGCAAGACCATGAGGGGAAGGACTTTGTAGAAAGAATAACAAAACGGCTTCACGCCATGAGCTATCACATGAGAACTTACTTTTGGATCGACCTAAAGCAACTAAATGATATATACCGATATAAAACTGAAGAATACTCTCATACTGCTTTGAACAAGTTCAACGTAATACCTGATTCTCTTCCTGAATGGATTTTTGACTTCATGCCAACTCGTGGTGGATACTTCATTGGAAATGTCAGCCCTGCAAGAATGGACTTCCGTTGGTTTTGCTTGGGAAATTGCATTGCAATTCTTTCTGCCTTGGCAACACCAGAACAAGCCACTGCTATTATGGATCTTATTGAATCGCGGTGGGAAGAGCTGGTTGGAGAAATGCCGTTAAAGGTTTGTTACCCTGCCATTGAAAGCCACGAGTGGCGAATTGTAACTGGATGTGACCCAAAAAATACAAGATGGAGTTACCATAACGGTGGTTCTTGGCCAGTTCTCCTATGGCTTTTAACAGCTGCATGTATCAAGACTGGGCGACCGCAGATTGCAAGACGTGCACTCGAACTGGCTGAATCCAGGCTACTGAAAGACAGCTGGCCAGAATATTATGATGGGACACTTGGACGGTACATCGGGAAACAGGCACGAAAGTTTCAGACGTGGTCAATTGCAGGTTACCTAGTTGCAAAGATGATGTTGGAAGACCCTTCTCATTCAGGCATGGTGTCCTTGGAGGAAGATAAGCAGATGAAGCCTTTAATGAAAAGGTCACATTCATGGACTTGTTAA 1719 43.4 MSNSSSNMPQNGNVKNNDTLFTVDEIEESEFSKLLDRPRPLNMERQRSFDERSLGDLAIGFSPRLSSRVSSENFGRLSDNYDHSPSPGRKSDFNTPRSHTGFEQHPMVAEAWEALRRSLVYFRGQPVGTIAALDSTEENLNYDQVFVRDFVPSAFAFLMNGEPEIVKNFILKTLRLQSWEKKIDRFQLGEGVMPASFKVLHDPVRNTETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLAELPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALILLKQDHEGKDFVERITKRLHAMSYHMRTYFWIDLKQLNDIYRYKTEEYSHTALNKFNVIPDSLPEWIFDFMPTRGGYFIGNVSPARMDFRWFCLGNCIAILSALATPEQATAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRALELAESRLLKDSWPEYYDGTLGRYIGKQARKFQTWSIAGYLVAKMMLEDPSHSGMVSLEEDKQMKPLMKRSHSWTC* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 759560 763260 - CsaV3_7G000780.1 Csa07g00078 535641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00078 572 MobiDBLite consensus disorder prediction 76 100 - -
Csa07g00078 572 PANTHER ALKALINE/NEUTRAL INVERTASE B-RELATED 1 571 - -
Csa07g00078 572 Pfam Alkaline and neutral invertase 111 546 IPR024746 GO:0033926
Csa07g00078 572 PANTHER - 1 571 IPR024746 GO:0033926
Csa07g00078 572 Gene3D - 135 540 IPR012341 GO:0005975
Csa07g00078 572 SUPERFAMILY Six-hairpin glycosidases 110 539 IPR008928 GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00078 - - - csv:101204549 1176.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00078 Csa-Chr7:759560 Csa07g01385 Csa-Chr7:13894296 0 dispersed
Csa07g00078 Csa-Chr7:759560 Csa05g02740 Csa-Chr5:28145264 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g97 . . Bda06g00969 . . . . Bma12g00525 . Cmo11g01723 . . . . . Cpe04g00574 . Bhi05g01747 . . . . . . Cla02g00449 Cam02g0456 Cec02g0455 Cco02g0474 Clacu02g0457 Cmu02g0452 Cre02g0786 Cone12ag1209 Cone8ag1261 . . . Csa07g00078 . Cme01g01286 . . . . . . . . . . . Cma11g01397 . . . . . . . . . . . . . . . . . . . Lsi11g01179 . Chy01g00699 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001478 3 3 4 3 4 1 3 1 1 1 1 1 3 2 2 3 1 6 3 2 2 2 2 2 2 2 2 4 2 5 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00078 Csa_Chr07 FPKM 11.728903 13.313127 21.7556 20.131662 73.902031 66.652542 76.420959 30.883518 30.084913 28.655087