Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00082 ATGCATAATCCTCCCAGTTTCTTGATCTTCTTCTTGCTTTTTGCTTCAACTTTCTGTCATGGCAGTGACTTGACGACAGTTGAAGTTGTTGGTGTTGGAGAATGTGCAGATTGCTACAAGAATAACATTAAAACCAACCATGCCTTCTCAGGGCTTAGTGTTAGCATTGACTGCAAACAAAAAGATGGAACCACAGAAAGAAAAGGGGTTGCAAAGCTAGATGAAGAAGGAAACTTCAAAGTCTTACTTCCAACTGAGGTTTTGAATAAAGATGGAAATTTGAAAGGAAAGTGCTTTGCACAACTTCACAGTGCTTCTTCTACTCCTTGTCCTTCTCACGATGGCTCAGAAATGGCTTCAATGATTGCAATCAAATCCAAAGATAAAGGAAAACAAACATTTGGTTTGCCTAATGGAATCAAATTCAAAAGTGAAACTTGTGTTTCTGCCTTCTTTTGGCATCATTATTTTCATCACCCTCCTTTGCCTCCTTTCTCTATACCTGTTTTCCCTCCTCATCCTCCTGTGTATACCCATCCCTTGTTCCCTCCTAAGGTCTATGTTCCCCCCACCACTCCGGTCTACGAAAAGCCTCCACCAGTTGAAGAGAAGCCTCCACCAGTTGAAGAGAAGCCTCCACCGGTTGAAGAGAAGCCTCCACCGGTTTATGTGGAACCTCTTCCTCCACCAGTACCAGTTTACAAGCCAAAGCCACCGGTTTACAAGCCAAAGCCACCGGTTTACAAGCCAAAGCCACCGGTTTACAAGCCAGAGCCACCGGTCTACAAGCCAAAGCCACCGGTCTACAAGCCAAAGCCACCGGTCTATAAGCCAAAGCCACCTGTCTACAAGCCAAAGCCACCTGTCTACAAGCCAAAACCACCTGTTTACAAGCCTCCAACACCACAAAAGCCAGAGTCTCCTCCATATTATAAGCATCCATGGTATAAGATTCTCCCTCCAATTTCAAAGCTTCCACCATGTCCACCAACTCCAAAGACTTCAAGTGGAGATCAGAAGAAGATCATCAAAGAAATTCAGAGGGAGAGGGAGAGGGAGAGATCAGAAATGATACATACGAAGCTTGACCGCTATATAACTCTATTGCCCCATCCAACCCTAAATTCATATCGGTCTTCTTCTACGATAAGAAATTTCGGAACTCACAGAAACAATCCAAAAATGCCAAACCCTAAAGTTTTCTTCGACATGACAATCGGCGGCACACCGGCCGGCCGGATCATCATGGAGCTCTACGCCGATGTCACTCCCCGCACCGCCGAGAACTTCCGTGCACTCTGCACTGGTGAGAAGGGAGTCGGCAAAGGCGGCAAACCCCTTCATTACAAAGGATCCTCCTTCCACCGTGTGATCCCTAATTTCATGTGCCAGGGAGGTGATTTCACCGCCGGAAATGGTACAGGAGGTGAATCAATCTACGGAGCCAAGTTCGCCGATGAGAACTTCATCAAGAAGCACACCGGCCCTGGTATTCTATCCATGGCGAATGCTGGACCTGGAACCAACGGATCTCAGTTCTTCATTTGCACCGCTAAGACCGATTGGCTCGATGGTAAGCACGTTGTGTTCGGTCAAGTCGTTGAGGGTATGAATGTGGTAAAAGACGTTGAGAAAGTGGGTTCGAGCTCTGGAAGGACCTCGAAACCGGTTGTCATTGCCGATTGTGGCCAGCTCTCTTAG 1701 46.85 MHNPPSFLIFFLLFASTFCHGSDLTTVEVVGVGECADCYKNNIKTNHAFSGLSVSIDCKQKDGTTERKGVAKLDEEGNFKVLLPTEVLNKDGNLKGKCFAQLHSASSTPCPSHDGSEMASMIAIKSKDKGKQTFGLPNGIKFKSETCVSAFFWHHYFHHPPLPPFSIPVFPPHPPVYTHPLFPPKVYVPPTTPVYEKPPPVEEKPPPVEEKPPPVEEKPPPVYVEPLPPPVPVYKPKPPVYKPKPPVYKPKPPVYKPEPPVYKPKPPVYKPKPPVYKPKPPVYKPKPPVYKPKPPVYKPPTPQKPESPPYYKHPWYKILPPISKLPPCPPTPKTSSGDQKKIIKEIQRERERERSEMIHTKLDRYITLLPHPTLNSYRSSSTIRNFGTHRNNPKMPNPKVFFDMTIGGTPAGRIIMELYADVTPRTAENFRALCTGEKGVGKGGKPLHYKGSSFHRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPGTNGSQFFICTAKTDWLDGKHVVFGQVVEGMNVVKDVEKVGSSSGRTSKPVVIADCGQLS* 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 779944 786503 + CsaV3_7G000820.1 Csa07g00082 535645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00082 566 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 418 433 IPR002130 GO:0000413|GO:0003755
Csa07g00082 566 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 497 512 IPR002130 GO:0000413|GO:0003755
Csa07g00082 566 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 512 524 IPR002130 GO:0000413|GO:0003755
Csa07g00082 566 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 454 466 IPR002130 GO:0000413|GO:0003755
Csa07g00082 566 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 525 540 IPR002130 GO:0000413|GO:0003755
Csa07g00082 566 Pfam Pollen protein Ole e 1 like 29 112 - -
Csa07g00082 566 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 395 566 - -
Csa07g00082 566 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 402 563 IPR002130 GO:0000413|GO:0003755
Csa07g00082 566 MobiDBLite consensus disorder prediction 202 216 - -
Csa07g00082 566 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 449 466 IPR020892 GO:0003755|GO:0006457
Csa07g00082 566 CDD cyclophilin_ABH_like 398 563 - -
Csa07g00082 566 SUPERFAMILY Cyclophilin-like 392 565 IPR029000 -
Csa07g00082 566 MobiDBLite consensus disorder prediction 198 219 - -
Csa07g00082 566 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 401 564 IPR002130 GO:0000413|GO:0003755
Csa07g00082 566 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 395 566 - -
Csa07g00082 566 Gene3D - 385 566 IPR029000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00082 K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] - csv:101206458 354.369
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01357 Csa07g00082 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01199 Csa-Chr2:11781859 Csa07g00082 Csa-Chr7:779944 4.30E-61 dispersed
Csa05g03052 Csa-Chr5:30647624 Csa07g00082 Csa-Chr7:779944 2.18E-09 dispersed
Csa06g00799 Csa-Chr6:6427000 Csa07g00082 Csa-Chr7:779944 4.59E-62 dispersed
Csa06g01423 Csa-Chr6:12148035 Csa07g00082 Csa-Chr7:779944 1.84E-71 dispersed
Csa07g00082 Csa-Chr7:779944 Csa07g01677 Csa-Chr7:17231880 1.57E-71 dispersed
Csa01g03439 Csa-Chr1:31348594 Csa07g00082 Csa-Chr7:779944 9.02E-78 transposed
Csa05g02871 Csa-Chr5:29027477 Csa07g00082 Csa-Chr7:779944 1.55E-62 transposed
Csa02g01357 Csa-Chr2:13044509 Csa07g00082 Csa-Chr7:779944 5.18E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g117 . . . . . Bpe12g00110 Bma05g00415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00465 Csa07g00082 . . . Blo13g00524 . . . . . . . . . . . . . Cpe16g00299 Cpe05g01313 . . . . . . . Cla02g01128 Cam02g1203 Cec02g1206 Cco02g1256 Clacu02g1192 Cmu02g1154 Cre02g1464 . Csa02g01357 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000569 2 5 4 4 2 3 5 3 3 3 3 3 5 3 2 5 3 6 6 3 3 4 3 3 1 2 2 8 4 2 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00082 Csa_Chr07 FPKM 1.191057 1.231916 1.682177 1.429995 0.567585 0.832391 0.576971 2.406977 3.132234 2.75323