Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa07g00084 | ATGGCGGCAATGGTTTCTTCTCCATGGGGAAAACCCGGCGCTTGGGCCCTCGATTCTGAGGAACACGATGCTCAACTCCTTAAAGAACAGGAACAGCAGAAACAACCTGAACTCAGCCTCGATTTCCCCTCCCTCAACGACGCCTTAGCCACCAAGCAGAAGAAGAAAGCCCAAACTCTCTCATTAGCCGAGTTCAACACCTATGCAACTACCGGTTCGAGATCTGAGGATTTTATTGTTCTACCCACCGGCCCTCGCCAACGGACGGCGGAGGAGCTCGACCGGAACAGGCTCGGTGGTGGGTTCAGGAATTATGGTTCGAATGGTTCGTATGAAAGGAATAGTAGGTATTCTAACGCGGATGATTCGTCTAATTCGAAGTGGGGTTCTTCTAGGGTTTCTGATGAGAATCGGAGGAGTAGTAATAGAGCGGATTCAAGTAAGGAATTTACGTCTTCTAGAGCTGACGAGGTTGATAATTGGGCTTTAACTAAGAAGCCCATGGCTGGAAATGGATTCGAGAGAAGGGAGAGAGGATTAGGGTTTTCGGATTCGCAATCATCGAAAGCGGATGAATCAGAGAGTTGGGTTTCTAATAAGAGCAATATTCCGTCCGATGGCAGGAGATTTGACAGAGAGCGACGAGGAGGGTTCACAGCGAGCGGCGGCGGGGCAGATTCAGATAATTGGGGGAGGAAGAAAGAGGAAGGTAATGCTGGTGGCGTCATTAGTAGTCGGCCAAAGCTTAGTCTACAGCCACGTACGTTACCGGTTGTCGATGGGAAATCGTCGGAGATATCAGCGACAGCAGCGAGGTCCAAGAGTTCCAACCCATTTGGAGCGGCGAGGCCGAGGGAAGAGGTACTAGCCGAGAAGGGACATGACTGGAAAAAGCTTGACGAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCAGTGGAGGAGAAGACAGAAAAATCTAACCCCATTTTCTTTAGGAAAAGGAGCTTTGGCAATGGAAATAGCCGGGCTGCTGAGGACAGAACAGAGAGGAGCTGGAGAAAACCGGAGTCGCCACCGCCACAGGAGTATCCGGAATCTCGTCCCGAAAGTGGAGAGGAAAATGTAAATGGAGATTGCGAAGGCGAACCCGATCCCGAACGCGACGGGGGCGAGAATGGAGCTTGA | 1164 | 51.03 | MAAMVSSPWGKPGAWALDSEEHDAQLLKEQEQQKQPELSLDFPSLNDALATKQKKKAQTLSLAEFNTYATTGSRSEDFIVLPTGPRQRTAEELDRNRLGGGFRNYGSNGSYERNSRYSNADDSSNSKWGSSRVSDENRRSSNRADSSKEFTSSRADEVDNWALTKKPMAGNGFERRERGLGFSDSQSSKADESESWVSNKSNIPSDGRRFDRERRGGFTASGGGADSDNWGRKKEEGNAGGVISSRPKLSLQPRTLPVVDGKSSEISATAARSKSSNPFGAARPREEVLAEKGHDWKKLDEQLESKIKEVSVEEKTEKSNPIFFRKRSFGNGNSRAAEDRTERSWRKPESPPPQEYPESRPESGEENVNGDCEGEPDPERDGGENGA* | 388 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 796525 | 798886 | + | CsaV3_7G000840.1 | Csa07g00084 | 535647 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa07g00084 | 387 | MobiDBLite | consensus disorder prediction | 359 | 387 | - | - | |
| Csa07g00084 | 387 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 1 | 350 | IPR010433 | GO:0003743 | |
| Csa07g00084 | 387 | MobiDBLite | consensus disorder prediction | 183 | 204 | - | - | |
| Csa07g00084 | 387 | MobiDBLite | consensus disorder prediction | 74 | 294 | - | - | |
| Csa07g00084 | 387 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Csa07g00084 | 387 | MobiDBLite | consensus disorder prediction | 107 | 131 | - | - | |
| Csa07g00084 | 387 | MobiDBLite | consensus disorder prediction | 310 | 387 | - | - | |
| Csa07g00084 | 387 | MobiDBLite | consensus disorder prediction | 332 | 349 | - | - | |
| Csa07g00084 | 387 | Pfam | Plant specific eukaryotic initiation factor 4B | 6 | 321 | IPR010433 | GO:0003743 | |
| Csa07g00084 | 387 | MobiDBLite | consensus disorder prediction | 132 | 161 | - | - | |
| Csa07g00084 | 387 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 | 1 | 350 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Csa02g01360 | Csa07g00084 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa02g01779 | Csa-Chr2:17252709 | Csa07g00084 | Csa-Chr7:796525 | 2.54E-43 | transposed | |
| Csa02g01360 | Csa-Chr2:13099403 | Csa07g00084 | Csa-Chr7:796525 | 9.37E-127 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa07g00084 | - | - | csv:101206224 | 718.383 |