Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00085 ATGAACATCGTCTTCTTCCTCTCAGCTGTCTTACTCTTCACTGGCGTCGCCAACTCCTCCCACTTCTCCATCGACGAAGCCACCATTGCCGAAATTCAAAACGCCTTCTCCCAAAACAAACTCACCTCCACACAACTCCTCGACTATTACCTCAAAAAAATACACCTCCTCAATCCAGTCCTCAAAAGCGTTCTCGAACTAAACCCAGACGCAAGAGCTCAAGCGGAAGCCGCCGATCGAGAGAGGCTTCTCGCCGGTGGAAAAGCCCGAGGCGAACTCCATGGCGTTCCAATTCTACTCAAGGACGCCATTGCGACTAAGGATCTTCTCAATACAACAGCCGGATCCTTCGCGTTGTTGGGTTCGGTGGTGCCTCGAGATGCGACGGTGGTTAGTCGCCTGAGAAACGCCGGTGCAGTGATTTTGGGGAAAACTTCACTTACAGAGTGGTATAAATCCCGTTCTTTTGAGATTCCCAATGGATGGTGTGCTCGTGGCGGTCAAGCGGTGAACCCATATGGAAGAGGAGGGGATCCATGTGGGTCAAGCAGTGGGTCGGCGATATCGGTGGCGGCGAATATGGTGGCGGTGTCATTAGGGACGGAGACTGATGGTTCGATTCTGTGTCCGGCCGATTACAACTCGGTGGTTGGGATTAAGCCTACCGTCGGTCTCACGAGCCGGGCCGGCGTTATCCCGGTCACTCCTCGCCAAGACACAATTGGGCCCATATGTAGAACAGTTTCAGATGCTGTTTATGTGCTTGAAGCTATTGTTGGATTTGATCCGATGGACTATGAGGTAACCAAGGAAGCTTCTCAATTCATACCTTCAGGTGGTTACAAACAGTTTCTAAGGAAAAATGGGCTCAAGGGAAAGAGATTAGGCATTGTTAGGCATCCCTTTTCTGACTTGTATCCCAATAACTCCATCGCCATTCCAACTTTTGAGCAACATCTCAATCTGCTAAGGAAGATGGGAGCAACCATTGTAGACAACCTTCAAATATCAAATGTAGATGTCATTTTGAATTCGTATGAAAGTGGTGAATTCATTGCGATAATAGCTGAGTTCAAGGTGGCCATAAATGATTACCTCAAGAAACTCATCCGAAGTCCAGTTAGATCTTTGGCTGACATTATCTCTTTCAACAACAACCACGCTGAACTAGAGAAAATGAAAGAGTATGGCCAAGATGCCTTTCTTTTATCTGAACAAACAAATGGTATCGGAGTGATGGAGAAGGAGGCGATTAGTAAGATGGCGAACTTATCACGAAACGGGTTCGAGGAATTAATGAAAGGCAACAATTTGGATGCAATGGTGACAATAGGGATAGGAGTTGAAAGTGTGCTAGCAATTGGGGGATACCCAGGAATAAGTGTCCCAGCTGGATATGAAGAAAACGGAGAGCCATTTGGTATTCTATTTGGAGGTCTTAAGGGGAGTGAACCAAAGCTAATTGAGATTGCTTATGCATATGAACAAGCCACCATGGTGAGAGAGCCACCTCCTCTTCTTTCTCAAATTTTAAGTTTGTGA 1542 46.82 MNIVFFLSAVLLFTGVANSSHFSIDEATIAEIQNAFSQNKLTSTQLLDYYLKKIHLLNPVLKSVLELNPDARAQAEAADRERLLAGGKARGELHGVPILLKDAIATKDLLNTTAGSFALLGSVVPRDATVVSRLRNAGAVILGKTSLTEWYKSRSFEIPNGWCARGGQAVNPYGRGGDPCGSSSGSAISVAANMVAVSLGTETDGSILCPADYNSVVGIKPTVGLTSRAGVIPVTPRQDTIGPICRTVSDAVYVLEAIVGFDPMDYEVTKEASQFIPSGGYKQFLRKNGLKGKRLGIVRHPFSDLYPNNSIAIPTFEQHLNLLRKMGATIVDNLQISNVDVILNSYESGEFIAIIAEFKVAINDYLKKLIRSPVRSLADIISFNNNHAELEKMKEYGQDAFLLSEQTNGIGVMEKEAISKMANLSRNGFEELMKGNNLDAMVTIGIGVESVLAIGGYPGISVPAGYEENGEPFGILFGGLKGSEPKLIEIAYAYEQATMVREPPPLLSQILSL* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 799707 803019 + CsaV3_7G000850.1 Csa07g00085 535648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00085 513 Pfam Amidase 46 487 IPR023631 -
Csa07g00085 513 Gene3D Amidase signature (AS) domain 13 506 IPR036928 -
Csa07g00085 513 PANTHER AMIDASE 7 509 - -
Csa07g00085 513 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 7 509 - -
Csa07g00085 513 SUPERFAMILY Amidase signature (AS) enzymes 23 506 IPR036928 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00085 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - csv:101205749 957.977
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01363 Csa07g00085 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00085 Csa-Chr7:799707 Csa07g00640 Csa-Chr7:4601608 2.26E-20 dispersed
Csa07g00085 Csa-Chr7:799707 Csa07g00086 Csa-Chr7:804272 0 tandem
Csa03g00362 Csa-Chr3:3020568 Csa07g00085 Csa-Chr7:799707 2.22E-28 transposed
Csa06g02409 Csa-Chr6:21506697 Csa07g00085 Csa-Chr7:799707 4.65E-38 transposed
Csa02g01363 Csa-Chr2:13113555 Csa07g00085 Csa-Chr7:799707 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g123 . . . . . . . . Cmo19g00736 Cmo11g01729 . . . . . . Cpe15g00582 . . . . . . . . . . . . . . Cone12ag1217 Cone8ag1270 . . . Csa07g00085 Chy11g00286 . Blo04g00557 . . . . . Bma03g00597 . . . . . . . Car19g00556 . . Bhi10g01881 Tan05g1178 . . Hepe08g0269 . . Cla02g01140 Cam02g1217 Cec02g1224 Cco02g1270 Clacu02g1199 Cmu02g1168 Cre02g1475 . Csa02g01363 . Cme11g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00085 Csa_Chr07 FPKM 4.717002 4.759008 4.401889 4.619583 9.138623 7.932956 9.807036 7.056838 5.345555 6.884279