Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00087 ATGGAAAATGGGGTTGAGGTTGTTGATGGATTGCACGATGGAGAAAAGAAGTTTGTGGGAGATGGTGTTTCACGAGATAAGGTAGATGAAACAGTTGTAGTTGGCTCTCATGAATCTAAGGATACGGAAGGGGAAGATGTTTTTGAGGAGGCATTAGATGGGAAAGATCATTTAATAGAGCAGAGCCCGAAATATGGTTCGGTGAATGGCAATATTGCAGAAGAAGAAGAAATCAATGGTTTTACGTCTGGAGTGACTTCTAACCATCCTAACGGTGCTCATGATGAAGAGAAGTTTGAAGAGGCAATAGAGGCAAGTAGGGTAAATGAAAACCCGTTGGTGGAGGAGCAAGATGTGAATTCTGATAAGGAGACAGAATGCTTGGATGGGAAATTGGTCGACAATGCAGTTGTGGCTTCTATTATTGATGAGAGAGGAACTGAAGAGGAAGCAGTGACTTCCGAGTTGAACGAGACGAAGGATGATGAGTTGGATTTCAGTAGAAATGATTCAAAAATTAATACATTAGAGAACGGTGCTAGCCCAGAGGTTGTAGTACTGAAGGACGGGGATGAGGATGATTTGAAATATGGTTCGAAGAGTACGAAGTCTGAAAATAATGATAGTAACGATTTGAATGTGACTTTGTCTTCAGATGATGAATTAGTGAATAAGAGTGCTGATTTGGTAGGGGGGACTAACCTGGATTCTACCAGTGAGTTTCTTACTGAAAATCGAGATCATGTGGAACTGAATGGGAAGAGCTTAGGTACAGAATTCTCAAACCACGTTGAGAAGACCGAGGAGCCACTAAATGTACCTGTTGTAGATTTAGACAATCTGGATATTACAAATGCTGAGCCAAGGGATGATTCTCTTCACGTGGATCTAGAACTGCCAAACAATGAGAGTGAAGACATAAAAGAGGCGACAACTAGTATTGAGCCTAAGAAGGATGATAATAAAAATGAAGAAAGCTCTTCAGCCTGCATGACTACCACAAATCAGGATCACAGGACTGAGGAAGTGACTACCACAAATCAGGATCACAGGAATGAGGAAGTGACTACCACAAATCAGGATCACAGGAATGAGGAAGTGACTACTGCAGATGAGAATCACCGAATGGAGGAAGTGAAAAATGATTCTATTGGGAAAGATTCAGAAAAGCAGTCCAGAGAATCTCATGAATTGAACGGGACTACTTCTGATGACCAACATGAACCTGTGGGTGAAAATGAAATTTCTCTAGAGACAGTTAAGGATATCTCAGCTTCTGAAAAGATAGCAGATGAGAAAATTGAGAAGATCCAGGACAGGGAAAGTGATGTGAAGGTGAAGGAAGACAATACGTCTAGACATCAGCATCCTGTTGATAGTTCCAATAATGGCCCCGACATTTTAGGGGTTGAAAAGACAGGGAGCAAAGATAAGGTTGGACAGGACAAAACTCAAGTGAACAGGGATACAGAGACTCAACCTGCATCAATCATTGCTTCATCATCTGGAAAATCTACAAATCCCACTCCTCCTGCCCGTCCAGCTGGTCTTGGGCGTGCTGCTCCATTATTGGAACCTGCCCCTCGGGTGGTGCAGCCGCCTCGAGTTAATGGTACTGTATCCCATGTTCAAATGCAACAAATTGATGATCCTGTTAATGGGGATGCTGAGGAAAATGATGATACTCGTGAGCAACTCCAGATGATAAGAGTGAAATTTTTGCGTCTTGCACATAGGCTTGGGCAAACTCCACACAATGTTGTTGTGGCACAAGTTCTATACCGTCTTGGATTAGCTGAGCAACTTCGAGGAAGAAATGGAGGTCGGGTTGGTGCCTTCAGCTTTGACCGTGCCAGTGCCATGGCAGAGCAGCTGGAGGCAGCTGGGCAAGAGCCACTTGATTTCTCTTGTACAATCATGGTTCTTGGAAAGACAGGTGTGGGTAAAAGTGCTACCATCAACTCCATATTTGATGAAGTTAAATTCAGTACTGATGCTTTTCAAATGGGCACAAAAAAGGTTCAAGATGTTGTTGGAACTGTGCAGGGGATCAGAGTACGGGTAATTGACACTCCTGGCCTTCTTTCCTCTTGGTCCGACCAGCGCCAAAATGAGAAAATCCTTCTCTCTGTTAAGCGTTTTATAAAAAAGACGCCTCCAGATATTGTTCTGTATCTTGATAGGTTGGACATGCAAACCCGGGATTTCAGTGATATGCCACTCTTGCGTACAATTACTGAAATATTTGGACCATCAATATGGTTCAATGCGATTGTGGTTCTTACTCATGCAGCATCTGCTCCACCTGATGGTCCAAATGGTACTGCTTCTAGTTATGATATGTTTGTCACTCAGCGGTCTCATGTTGTACAGCAAGCTATACGCCAGGCTGCAGGGGATATGCGCCTTATGAACCCTGTCTCATTAGTGGAGAATCACTCTGCTTGCAGAACGAACCGAGCTGGGCAAAGGGTATTGCCAAATGGACAGGTTTGGAAACCTCATTTATTATTGCTCTCATTTGCCTCAAAGATTTTGGCCGAAGCCAACACTCTTCTGAAGTTGCAAGATAGTCCTCCTGGGAGGCCATTTACTCCTAGGTCGAAATCACCACCTTTACCGTTCCTTCTCTCTTCCCTTCTTCAGTCCAGACCTCAAGTTAAACTGCCGGAGGAACAGTTTGGTGATGATGATGGTCTTGAGGATGACCTTGATGAATCATCAGATTCTGAAAATGAATCTGAATATGATGAATTGCCACCTTTTAAACGACTGACAAAAGCACAGGTGGCAAAGCTCTCCAAAGCACAGAAGAAGGCCTACTTTGACGAATTGGAATACAGGGAAAAACTTTTTATGAAGAAGCAACTGAAAGAAGAGAAAAGGAGAAGGAAGATGATGAAGAAAATGGCAGCTGAGGCAAAAGATCAACGCAGCGATGGGAGTGAGAATGTAGAAGAAGATGCTGGTGGTGCTGCTTCAGTACCGGTTCCCATGCCTGATTTGGCATTACCTGCTTCCTTTGATTCTGATAACCCCACTCACCGGTATCGTTATCTCGATTCCTCTAACCAGTGGCTAATAAGGCCTGTACTCGAAACACATGGATGGGATCATGATGTTGGTTATGAAGGTATAAATGCAGAGAAGTTGTTTGTCGTCAAAGACACAATACCCATCTCTTTTAGTGGCCAAGTTACAAAGGATAAGAAGGATGCAAATGTTCAAATAGAGATGACCAGTTCGATTAAGCATGGGGAAACTAAAGCATCTTCCATTGGTTTCGATATGCAGACCGTTGGGAAGGATTTGGCCTATACATTACGTGGTGAGACAACATTTATTAATTTTAGGAAGAACAAGGCAATTGCTGGTCTGTCACTTGCCCTATTAGGCGATGCCTTGTCTGCCGGATTCAAAGTTGAAGACAAGTTGATTGCTAACAAGCGATTTCGATTAGTTGTGACGGGGGGAGCAATGACCGGTAGGGGAGATGTAGCTTATGGTGGCAGCCTGGAGGCTCAATTGAGAGATAAAGACTATCCTTTGGGTCGTTCACTTTCAACTCTTGGGCTCTCAGTCATGGATTGGCATGGAGATCTTGCTATTGGTTGCAATGTACAATCTCAAGTTCCCGTAGGACGATCGACGAATCTGATTGCTCGTGTGAATCTGAATAACAGGGGGGCAGGGCAAGTCAGCTTTCGGTTAAACAGCTCAGAACAGCTTCAGATAGCTATTGTTGGGCTCCTTCCTCTATTGAGAAAGCTTCTGGGTTGTTATCAATACTGGCAGGATGGACAATGA 3807 43.68 MENGVEVVDGLHDGEKKFVGDGVSRDKVDETVVVGSHESKDTEGEDVFEEALDGKDHLIEQSPKYGSVNGNIAEEEEINGFTSGVTSNHPNGAHDEEKFEEAIEASRVNENPLVEEQDVNSDKETECLDGKLVDNAVVASIIDERGTEEEAVTSELNETKDDELDFSRNDSKINTLENGASPEVVVLKDGDEDDLKYGSKSTKSENNDSNDLNVTLSSDDELVNKSADLVGGTNLDSTSEFLTENRDHVELNGKSLGTEFSNHVEKTEEPLNVPVVDLDNLDITNAEPRDDSLHVDLELPNNESEDIKEATTSIEPKKDDNKNEESSSACMTTTNQDHRTEEVTTTNQDHRNEEVTTTNQDHRNEEVTTADENHRMEEVKNDSIGKDSEKQSRESHELNGTTSDDQHEPVGENEISLETVKDISASEKIADEKIEKIQDRESDVKVKEDNTSRHQHPVDSSNNGPDILGVEKTGSKDKVGQDKTQVNRDTETQPASIIASSSGKSTNPTPPARPAGLGRAAPLLEPAPRVVQPPRVNGTVSHVQMQQIDDPVNGDAEENDDTREQLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQMGTKKVQDVVGTVQGIRVRVIDTPGLLSSWSDQRQNEKILLSVKRFIKKTPPDIVLYLDRLDMQTRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTLLKLQDSPPGRPFTPRSKSPPLPFLLSSLLQSRPQVKLPEEQFGDDDGLEDDLDESSDSENESEYDELPPFKRLTKAQVAKLSKAQKKAYFDELEYREKLFMKKQLKEEKRRRKMMKKMAAEAKDQRSDGSENVEEDAGGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINAEKLFVVKDTIPISFSGQVTKDKKDANVQIEMTSSIKHGETKASSIGFDMQTVGKDLAYTLRGETTFINFRKNKAIAGLSLALLGDALSAGFKVEDKLIANKRFRLVVTGGAMTGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAIGCNVQSQVPVGRSTNLIARVNLNNRGAGQVSFRLNSSEQLQIAIVGLLPLLRKLLGCYQYWQDGQ* 1269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 807914 813459 - CsaV3_7G000870.1 Csa07g00087 535650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00087 1268 MobiDBLite consensus disorder prediction 471 485 - -
Csa07g00087 1268 MobiDBLite consensus disorder prediction 891 921 - -
Csa07g00087 1268 MobiDBLite consensus disorder prediction 283 325 - -
Csa07g00087 1268 MobiDBLite consensus disorder prediction 966 985 - -
Csa07g00087 1268 MobiDBLite consensus disorder prediction 962 993 - -
Csa07g00087 1268 Gene3D - 606 854 IPR027417 -
Csa07g00087 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 771 IPR027417 -
Csa07g00087 1268 MobiDBLite consensus disorder prediction 1 23 - -
Csa07g00087 1268 CDD Toc34_like 609 854 - -
Csa07g00087 1268 MobiDBLite consensus disorder prediction 282 519 - -
Csa07g00087 1268 Coils Coil 957 977 - -
Csa07g00087 1268 MobiDBLite consensus disorder prediction 486 509 - -
Csa07g00087 1268 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 417 1260 - -
Csa07g00087 1268 MobiDBLite consensus disorder prediction 895 915 - -
Csa07g00087 1268 MobiDBLite consensus disorder prediction 342 415 - -
Csa07g00087 1268 ProSiteProfiles AIG1-type G domain profile. 634 863 IPR006703 GO:0005525
Csa07g00087 1268 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 417 1260 IPR045058 -
Csa07g00087 1268 Pfam AIG1 family 637 770 IPR006703 GO:0005525
Csa07g00087 1268 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 513 1261 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Csa07g00087 1268 MobiDBLite consensus disorder prediction 424 455 - -
Csa07g00087 1268 Pfam Translocase of chloroplast 159/132, membrane anchor domain 995 1258 IPR024283 -
Csa07g00087 1268 MobiDBLite consensus disorder prediction 326 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00087 - - - csv:101205042 2380.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00078 Csa-Chr3:627539 Csa07g00087 Csa-Chr7:807914 3.47E-36 dispersed
Csa04g00068 Csa-Chr4:374767 Csa07g00087 Csa-Chr7:807914 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00087 Csa_Chr07 FPKM 1.704545 0.533201 2.228046 1.724004 0.0 1.491483 3.264225 2.828568 3.399343 3.557142