Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00093 ATGTGGCGGTTCGTGGCCCAAAGGATGAGCTTTGAAGGTCGCATTATCAGAACAATTTGGGGAAGCAGATTTTTTGCTAACTTCGAGCTAATCTCTCTTCTCTACGAATCAAACGCCCTCCCTTTCGGTCCTCTCTACCCTCCTCCCATGGCCTTGCCCGTCGTAGACACTGAATACCTCAAGGAGATCGACAAGGCTCGCCGTGACCTTCGCGCTCTCATTGCTAATCGGAATTGTGCTCCCATCATGCTTCGTTTGGCTTGGCATGACGCTGGCACTTACGATGTGGTTACGAAAATTGGTGGACCTAATGGATCGATTAGGAACGAGGAGGAGTTTTCTCATGGTTCTAATAATGGACTGAAAAAAGCTATTGATTTTTGTGAGGAAGTGAAGTCTAAACATCCGAAGATTACTTATGCAGACCTGTACCAGCTAGCTGGCGTTGTTGCTGTTGAGGTCACTGGAGGCCCCACCATTGACTTTGTTCCCGGTAGAAAGGATTCAAACATTTGTCCTAAGGAAGGCCAACTTCCTGATGCTAAAAAAGGTGCACCGCATCTGCGTGACATTTTTTATAGGATGGGCCTGTCTGACAAGGATATTGTTGCATTATCCGGGGGTCACACTTTGGGAAGAGCACATCCGGAGAGATCTGGTTTTGATGGACCCTGGACAGAGGATCCTTTGAAGTTTGATAACTCATACTTTGTGGAACTGTTGAAAGGAGAAGCAGAGGGATTATTAAAACTTCCTACGGACAAGGCTTTACTTGAAGATCCTGAGTTCCGCCAATATGTGGAATTGTATGCCAAAGATGAAGATGCATTCTTCAAAGATTATGCTGCATCACACAAGAAACTTTCGGAGCTTGGGTTCACTCCAGGTTCTGCTAAGGCGATTGTGAAAGACAGCATCGTATTAGCACAGGGTGCTGTTGGAGTTGCGGTTGCAGCTGCTGTGGTAATTCTGAGCTACTTATATGAAGTCCGCAAAAAATCGAAGTAA 1008 46.03 MWRFVAQRMSFEGRIIRTIWGSRFFANFELISLLYESNALPFGPLYPPPMALPVVDTEYLKEIDKARRDLRALIANRNCAPIMLRLAWHDAGTYDVVTKIGGPNGSIRNEEEFSHGSNNGLKKAIDFCEEVKSKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNICPKEGQLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKGEAEGLLKLPTDKALLEDPEFRQYVELYAKDEDAFFKDYAASHKKLSELGFTPGSAKAIVKDSIVLAQGAVGVAVAAAVVILSYLYEVRKKSK* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 874920 880137 - CsaV3_7G000930.1 Csa07g00093 535656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00093 335 PANTHER L-ASCORBATE PEROXIDASE 4, PEROXISOMAL-RELATED 50 335 - -
Csa07g00093 335 ProSiteProfiles Plant heme peroxidase family profile. 80 309 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Plant ascorbate peroxidase signature 59 79 IPR002207 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Plant ascorbate peroxidase signature 80 95 IPR002207 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Plant ascorbate peroxidase signature 98 108 IPR002207 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Plant ascorbate peroxidase signature 112 136 IPR002207 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Plant ascorbate peroxidase signature 137 155 IPR002207 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Plant ascorbate peroxidase signature 156 168 IPR002207 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Plant ascorbate peroxidase signature 177 194 IPR002207 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Plant ascorbate peroxidase signature 195 216 IPR002207 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Plant ascorbate peroxidase signature 217 241 IPR002207 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Plant ascorbate peroxidase signature 269 293 IPR002207 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Haem peroxidase superfamily signature 80 94 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Haem peroxidase superfamily signature 138 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Haem peroxidase superfamily signature 156 168 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Haem peroxidase superfamily signature 201 216 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PRINTS Haem peroxidase superfamily signature 225 240 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 50 335 IPR044831 GO:0004601|GO:0034599
Csa07g00093 335 ProSitePatterns Peroxidases active site signature. 80 91 IPR019794 GO:0004601
Csa07g00093 335 CDD ascorbate_peroxidase 53 295 - -
Csa07g00093 335 SUPERFAMILY Heme-dependent peroxidases 60 297 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 ProSitePatterns Peroxidases proximal heme-ligand signature. 201 211 IPR019793 -
Csa07g00093 335 Gene3D - 66 292 - -
Csa07g00093 335 Pfam Peroxidase 67 273 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00093 335 Gene3D Peroxidase, domain 2 179 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00093 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101206941 660.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02390 Csa-Chr2:21178967 Csa07g00093 Csa-Chr7:874920 1.74E-39 dispersed
Csa06g01692 Csa-Chr6:14861785 Csa07g00093 Csa-Chr7:874920 1.95E-106 dispersed
Csa06g02144 Csa-Chr6:19183659 Csa07g00093 Csa-Chr7:874920 3.06E-77 dispersed
Csa06g03346 Csa-Chr6:27925057 Csa07g00093 Csa-Chr7:874920 4.72E-134 dispersed
Csa07g00093 Csa-Chr7:874920 Csa04g02610 Csa-Chr4:25586011 4.02E-17 dispersed
Csa07g00093 Csa-Chr7:874920 Csa03g03898 Csa-Chr3:34204986 1.32E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g152 . . . . . . . . Cmo19g00742 . . . . . Sed05g2222 . Cpe15g00587 Bhi05g01726 Tan02g0695 Cmetu01g1029 . Hepe02g0430 . . . . . . . . . Cone12ag1229 Cone8ag1280 . . . Csa07g00093 . Cme01g01269 Blo04g00564 . . Bda14g00613 Bpe15g00817 . Bma03g00605 . . . . . . . Car19g00563 . . . . . . . . . . . . . . . . Lsi11g01196 . Chy01g00685 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00093 Csa_Chr07 FPKM 5.811966 7.64825 10.255134 10.721654 13.276317 14.824992 12.695828 8.974641 9.405253 10.15505