Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00106 ATGGCGAAACCAGTTCAAATCGAAGTATGGAATCCAAATGGAAAGTACAGAGTTGTCAGCACTAAGCCTATGCCTGGAACTCGCTGGATCAATCTCTTGATCGAACAAGATTGCCGAGTCGAAATTTGTACTGAGAAAAAGACGATACTCTCGGTTGAGGATATTCTTGCTCTCATCGGCGATAAGTGCGACGGCGTCATTGGACAGTTGACTGAAGATTGGGGAGAGGTGCTGTTTTCTGCGTTAAGCAGAGCGGGAGGGAAAGCTTTTAGTAATATGGCTGTTGGTTACAATAATGTAGATGTTAATGCTGCTAATAAGTACGGTGTTGCTGTAGGAAATACTCCTGGAGTACTTACAGAGACTACAGCAGAGTTGGCAGCTTCACTTTCTCTTGCAGCTGCAAGAAGGATAGTTGAAGCAGATGAGTTTATGAGGGCAGGTCGATATGATGGATGGCTTCCAAATTTGTTTGTTGGGAACTTGCTGAAAGGACAGACTGTTGGTGTGATTGGAGCTGGTCGTATTGGATCTGCTTATGCAAGAATGATGGTAGAAGGGTTTAAGATGAACCTGATCTACTTCGATCTTTACCAGTCAACTAGACTCGAAAAGTTCGTTACAGCCTATGGTGAGTTCCTGAAAGCCAACGGTGAGGCTCCTGTGACATGGAGAAGAGCATCATCAATGGATGAGGTGCTTCGAGAAGCAGATGTGATAAGTCTTCATCCCGTACTGGATAAAACTACCTTCCATCTTGTGAACAAAGAAAGTCTTAAAGCGATGAAGAAGGATGCAATTCTCATTAACTGCAGTAGGGGACCTGTGATCGATGAAGCAGCCCTTGTTGATCATTTGAGAGATAATCCCATGTTTCGAGTTGGCCTTGATGTTTTTGAGGATGAACCATACATGAAACCTGGACTTGCTGATATGAAGAACGCGATCATTGTTCCTCACATTGCTTCTGCTTCCAAGTGGACTCGCGAAGGAATGGCAACACTGGCTGCTCTTAATGTCTTGGGAAAGATTAAAGGATATCCTGTTTGGTCCGATCCAAACCGAGTAGAACCGTTCCTCGACGAGAATGTTTCACCTCCAGCTGCATCACCTAGCATTGTGAATGCCAAAGCCTTGGGTAACGCCTAA 1149 44.65 MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIGDKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVISLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFEDEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLGKIKGYPVWSDPNRVEPFLDENVSPPAASPSIVNAKALGNA* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 947346 951152 + CsaV3_7G001060.1 Csa07g00106 535669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00106 382 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 16 156 - -
Csa07g00106 382 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 28 347 - -
Csa07g00106 382 Gene3D - 118 321 - -
Csa07g00106 382 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 323 IPR036291 -
Csa07g00106 382 Gene3D - 18 346 - -
Csa07g00106 382 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 168 196 IPR029752 -
Csa07g00106 382 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 262 278 IPR029753 -
Csa07g00106 382 PANTHER ZGC:136493 28 347 - -
Csa07g00106 382 CDD GDH 16 346 - -
Csa07g00106 382 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 130 322 IPR006140 GO:0051287
Csa07g00106 382 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 31 347 IPR006139 GO:0016616|GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00106 K15893 HPR1; glycerate dehydrogenase [EC:1.1.1.29] - csv:101209132 744.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00865 Csa-Chr3:7263582 Csa07g00106 Csa-Chr7:947346 8.56E-09 dispersed
Csa03g02813 Csa-Chr3:26955870 Csa07g00106 Csa-Chr7:947346 1.82E-33 dispersed
Csa07g00106 Csa-Chr7:947346 Csa07g02250 Csa-Chr7:21038556 5.52E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g171 . . . . . . . . Cmo19g00752 . . . . . . . Cpe15g00597 . . . . . . . . . . . . . . . Cone8ag1289 . . . Csa07g00106 . . . . . . . . . . . . . Cma11g01377 Cma19g00743 . Car19g00572 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010312 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00106 Csa_Chr07 FPKM 3.212722 4.028645 3.663341 4.150771 4.035593 2.895588 4.405528 0.0 0.0 0.0