Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g00108 | ATGTCGAAAGAAGTCACGGAAGAGGGACAGTCCGGCCTCAGAAAGGACTACGTCGACCCACCCCCTGCTCCACTCATCGACGTCGCCGAACTCACCCTCTGGTCCTTCTACAGAGCCCTTATCGCTGAGTTCATTGCCACTCTCCTCTTTCTCTACGTCACAATCGCCACCGTCATCGGCAACAACAAACAGACCAAAGCGTGTGATGGCGTCGGAATCCTCGGTATCGCATGGGCCTTCGGTGGCATGATCTTTGTACTCGTCTACTGCACCGCCGGAATCTCCGGTGGTCATATTAATCCCGCGGTGACGTTCGGGTTGTTCCTGGCGAGGAAAGTGTCGCTGATCAGAGCGTTTGGGTACATGGTGGCGCAGTGCGCCGGAGCCATCGTTGGCGTTGGATTAGTTAAGGCTTTCATGAAGCATGATTATAACAACAACGGCGGCGGAGCCAACGCCGTTAATTCTGGTTACAGTAGAGGAACGGCTCTTGGTGCTGAGATTATTGGAACTTTCGTTCTTGTTTACACTGTCTTCTCCGCTACTGATCCCAAGAGGAGCGCGCGTGATTCTCACATTCCTGTTTTAGCTCCGTTGCCAATTGGGTTCGCCGTGTTCATGGTTCATCTAGCAACCATTCCCATCACAGGAACCGGAATCAACCCGGCCAGAAGCTTCGGCGCCGCCGTTATCTACAACCGTGAAAAACCCTGGAATGACCACTGGATCTTCTGGGTGGGTCCGTTCGTGGGAGCGTTAGCGGCGGCAGCGTACCACCAGTACATTCTCCGGGCAGCCGCCATTAAAGCATTGGGATCATTCCGCAGCAACCCCACAAACTGA | 843 | 54.21 | MSKEVTEEGQSGLRKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKACDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAFGYMVAQCAGAIVGVGLVKAFMKHDYNNNGGGANAVNSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNREKPWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN* | 281 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 967881 | 969569 | + | CsaV3_7G001080.1 | Csa07g00108 | 535671 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g00108 | 280 | ProSitePatterns | MIP family signature. | 98 | 106 | IPR022357 | - | |
Csa07g00108 | 280 | Pfam | Major intrinsic protein | 31 | 258 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa07g00108 | 280 | CDD | MIP | 38 | 262 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa07g00108 | 280 | TIGRFAM | MIP: MIP family channel proteins | 42 | 258 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa07g00108 | 280 | PRINTS | Major intrinsic protein family signature | 38 | 57 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa07g00108 | 280 | PRINTS | Major intrinsic protein family signature | 80 | 104 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa07g00108 | 280 | PRINTS | Major intrinsic protein family signature | 117 | 136 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa07g00108 | 280 | PRINTS | Major intrinsic protein family signature | 166 | 184 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa07g00108 | 280 | PRINTS | Major intrinsic protein family signature | 202 | 224 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa07g00108 | 280 | PRINTS | Major intrinsic protein family signature | 242 | 262 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa07g00108 | 280 | Gene3D | Glycerol uptake facilitator protein. | 23 | 280 | IPR023271 | - | |
Csa07g00108 | 280 | PANTHER | AQUAPORIN PIP-TYPE-RELATED | 1 | 280 | - | - | |
Csa07g00108 | 280 | SUPERFAMILY | Aquaporin-like | 30 | 264 | IPR023271 | - | |
Csa07g00108 | 280 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 1 | 280 | IPR034294 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g02568 | Csa-Chr6:22701550 | Csa07g00108 | Csa-Chr7:967881 | 3.46E-155 | dispersed | |
Csa06g02569 | Csa-Chr6:22706112 | Csa07g00108 | Csa-Chr7:967881 | 1.54E-139 | dispersed | |
Csa07g00108 | Csa-Chr7:967881 | Csa05g02810 | Csa-Chr5:28635798 | 6.06E-159 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g00108 | K09872 | - | csv:101209627 | 558.14 |