Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00108 ATGTCGAAAGAAGTCACGGAAGAGGGACAGTCCGGCCTCAGAAAGGACTACGTCGACCCACCCCCTGCTCCACTCATCGACGTCGCCGAACTCACCCTCTGGTCCTTCTACAGAGCCCTTATCGCTGAGTTCATTGCCACTCTCCTCTTTCTCTACGTCACAATCGCCACCGTCATCGGCAACAACAAACAGACCAAAGCGTGTGATGGCGTCGGAATCCTCGGTATCGCATGGGCCTTCGGTGGCATGATCTTTGTACTCGTCTACTGCACCGCCGGAATCTCCGGTGGTCATATTAATCCCGCGGTGACGTTCGGGTTGTTCCTGGCGAGGAAAGTGTCGCTGATCAGAGCGTTTGGGTACATGGTGGCGCAGTGCGCCGGAGCCATCGTTGGCGTTGGATTAGTTAAGGCTTTCATGAAGCATGATTATAACAACAACGGCGGCGGAGCCAACGCCGTTAATTCTGGTTACAGTAGAGGAACGGCTCTTGGTGCTGAGATTATTGGAACTTTCGTTCTTGTTTACACTGTCTTCTCCGCTACTGATCCCAAGAGGAGCGCGCGTGATTCTCACATTCCTGTTTTAGCTCCGTTGCCAATTGGGTTCGCCGTGTTCATGGTTCATCTAGCAACCATTCCCATCACAGGAACCGGAATCAACCCGGCCAGAAGCTTCGGCGCCGCCGTTATCTACAACCGTGAAAAACCCTGGAATGACCACTGGATCTTCTGGGTGGGTCCGTTCGTGGGAGCGTTAGCGGCGGCAGCGTACCACCAGTACATTCTCCGGGCAGCCGCCATTAAAGCATTGGGATCATTCCGCAGCAACCCCACAAACTGA 843 54.21 MSKEVTEEGQSGLRKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKACDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAFGYMVAQCAGAIVGVGLVKAFMKHDYNNNGGGANAVNSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNREKPWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN* 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 967881 969569 + CsaV3_7G001080.1 Csa07g00108 535671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00108 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Csa07g00108 280 Pfam Major intrinsic protein 31 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g00108 280 CDD MIP 38 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g00108 280 TIGRFAM MIP: MIP family channel proteins 42 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g00108 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g00108 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g00108 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g00108 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g00108 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g00108 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g00108 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Csa07g00108 280 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 280 - -
Csa07g00108 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Csa07g00108 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 280 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02568 Csa-Chr6:22701550 Csa07g00108 Csa-Chr7:967881 3.46E-155 dispersed
Csa06g02569 Csa-Chr6:22706112 Csa07g00108 Csa-Chr7:967881 1.54E-139 dispersed
Csa07g00108 Csa-Chr7:967881 Csa05g02810 Csa-Chr5:28635798 6.06E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00108 K09872 - csv:101209627 558.14