Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00111 ATGATCGTCTGCGTCGCCGTCGTTGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTTCACTGTTCCCTGGATGTCGTCGATGAGCGAGTGAACAATCCGAGAAAATCTGGACCGACCCTGAACGAGACATTTCTGGGTCTTCTTTATCCGACAGAAAATTACAAAGTGTATGGCTATTTGACTAACACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTTAGAAGTTTTTTCAGGAGATTTCATGCTGCATATGTAGATGCAGTTTCGAACCCGTTTCATGTGCCAGGTAAGAAAATTACTTCCAAAACTTTTGCAGAAAGTGTGAGCACCATTGTCAAGTCATTTGGCTTCAGTTCAGCTATTTGA 432 43.98 MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI* 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 988938 991465 + CsaV3_7G001110.1 Csa07g00111 535674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00111 143 PANTHER BNAA06G40850D PROTEIN 1 138 - -
Csa07g00111 143 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 1 138 IPR006722 GO:0006888
Csa07g00111 143 CDD TRAPPC2L 3 134 IPR044760 GO:0006888
Csa07g00111 143 Pfam Sedlin, N-terminal conserved region 7 135 IPR006722 GO:0006888
Csa07g00111 143 Gene3D - 1 140 - -
Csa07g00111 143 SUPERFAMILY SNARE-like 2 137 IPR011012 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00111 K20301 TRAPPC2, TRS20; trafficking protein particle complex subunit 2 - csv:101211102 290.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01657 Csa-Chr2:15734837 Csa07g00111 Csa-Chr7:988938 2.97E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g178 . . . . . . . . . Cmo11g01749 . . . . Sed05g3908 Cpe04g00601 . Bhi05g01696 Tan02g0668 Cmetu01g1432 . Hepe02g0416 . . Cla02g00416 Cam02g0426 Cec02g0424 Cco02g0442 Clacu02g0427 Cmu02g0422 Cre02g0756 . . Cone3ag0958 Cone10ag1231 . Csa07g00111 . Cme01g01251 . . . . . . . . . . . Cma11g01369 . . . . . . . . . . . . . . . . . . . Lsi11g01211 . Chy01g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010608 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00111 Csa_Chr07 FPKM 25.547228 29.839674 16.832447 17.22378 12.33306 10.208692 12.941032 10.801071 9.070934 10.52145