Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00117 ATGTTATCGGAGTTGATGAACTTTTTGAGGGCCTGTTTCCAGTCGAGCTCCGATCGGCATGGGGCGGGGGAAATCAGGGGGCGGCAAGAAGGGTTGCTATGGTACAAAGATAGTGGACAACACTTGAATGGAGAGTTTTCAATGTCTGTGATTCAGGCTAACAATTTGCTCGAAGATCAAAGCCAGATTGAGTCAGGCAGTTTGAGCTTACAAGAGTCTGGCCCCAGAGGAACATTTGTTGGTGTGTATGATGGCCATGGAGGCCCAGAGACTTCTCGGTATATCTGTGATCATCTTTTCCAGCATCTCAAGAGTGAGACATCTACTCTTTGCACCAATTCAAAACTCAGAACTTTCTTATTGCAGCTTTACATTTTCTGTTCATTCCTATTTGATCATGGAGAGAAAGGAAAGAAACTAGTTTGTGGATCATTTAGGCAATTGGAAGATTCAGGAGTCACTTGGGGTTATGTTTACTAG 480 43.96 MLSELMNFLRACFQSSSDRHGAGEIRGRQEGLLWYKDSGQHLNGEFSMSVIQANNLLEDQSQIESGSLSLQESGPRGTFVGVYDGHGGPETSRYICDHLFQHLKSETSTLCTNSKLRTFLLQLYIFCSFLFDHGEKGKKLVCGSFRQLEDSGVTWGYVY* 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1051293 1051973 + CsaV3_7G001170.1 Csa07g00117 535680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00117 159 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 109 - -
Csa07g00117 159 Gene3D - 28 125 IPR036457 -
Csa07g00117 159 PANTHER ALPHABET, ISOFORM E-RELATED 5 109 - -
Csa07g00117 159 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Csa07g00117 159 SUPERFAMILY PP2C-like 49 115 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01405 Csa07g00117 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00117 Csa-Chr7:1051293 Csa05g00646 Csa-Chr5:4308076 5.33E-37 dispersed
Csa02g01405 Csa-Chr2:13428092 Csa07g00117 Csa-Chr7:1051293 2.81E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00117 - K01102 csv:101211601 218.779