Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00118 ATGTCTGCGGATGTAATACGCAAGGCGTTTCAAGCGACGGAAGAGGGTTTTCTTTCAATAGTTCGAAGTCAATGGCCAACAAATCCTCAAATTGCAGCTGTGGGTTCATGCTGTCTAGTTGGTGTAATTTGTGATGGGACTCTCTATGTTGCAAATCTAGGCGATTCACGTGCTGTTTTGGGTAGAGCAGTGAAGGCAACTGGCGAGGTTCTAGCCATTCAGTTATCAACAGAGCACAATGTTTCCAATGAGTCAGTGAGGCAAGAGCTGCAGTCTTTGCATCCTGATGACCCGCAAGTTGTGGTTTTAAGGCATAATGTTTGGCGAGTAAAGGGCATAATACAGATTTCCAGATCTATAGGTGACGTGTACTTGAAAAAAGCTGAGTTCAATAGAGAACCATTGTATGCAAAGTTTCGAGTTCAGGAACCTTTCAGAACGCCATTTTTGAGCGCTGAACCAGCCATTTCTGAGATCCAGTTGAAACCAGATGATCAATTTGTTATATTTGCATCAGATGGTTTGTGGGAGCACCTTAGCAATCAGGAAGCGGTTGATATAGTTCATAGCCACAAACAAAGTGTGAGATCTCTATCTAATTTTTCTCGGGGAAGTGCAAAAAGACTGGTCAGAGCTGCACTTCAAATAGCTGCAAAGAAAAGAGAAATGAGGTACTCAGATTTGAAGAAGATCGGCCGTGGCGTCCGTCGCCATTTCCATGATGACATCACTGTGGTGGTTGTATTTCTTGATACAAATCTGCTCTTCAAAGCTAGCTCCATGAAGAGCATGAGCGTCTCACTTCGAGGTGGTGGACTCAACCGGCTTCCTAACTCTTTATCCCCTGTCACTACGCCCGTGTAG 864 44.44 MSADVIRKAFQATEEGFLSIVRSQWPTNPQIAAVGSCCLVGVICDGTLYVANLGDSRAVLGRAVKATGEVLAIQLSTEHNVSNESVRQELQSLHPDDPQVVVLRHNVWRVKGIIQISRSIGDVYLKKAEFNREPLYAKFRVQEPFRTPFLSAEPAISEIQLKPDDQFVIFASDGLWEHLSNQEAVDIVHSHKQSVRSLSNFSRGSAKRLVRAALQIAAKKREMRYSDLKKIGRGVRRHFHDDITVVVVFLDTNLLFKASSMKSMSVSLRGGGLNRLPNSLSPVTTPV* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1052155 1054439 + CsaV3_7G001180.1 Csa07g00118 535681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00118 287 CDD PP2Cc 4 250 IPR001932 -
Csa07g00118 287 Pfam Protein phosphatase 2C 4 206 IPR001932 -
Csa07g00118 287 Gene3D - 2 258 IPR036457 -
Csa07g00118 287 PANTHER ALPHABET, ISOFORM E-RELATED 1 276 - -
Csa07g00118 287 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 1 276 - -
Csa07g00118 287 SMART PP2C_4 1 248 IPR001932 -
Csa07g00118 287 SUPERFAMILY PP2C-like 3 251 IPR036457 -
Csa07g00118 287 ProSiteProfiles PPM-type phosphatase domain profile. 1 250 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03363 Csa-Chr6:28014814 Csa07g00118 Csa-Chr7:1052155 6.36E-145 dispersed
Csa07g00118 Csa-Chr7:1052155 Csa07g00698 Csa-Chr7:4993281 4.34E-103 dispersed
Csa07g00118 Csa-Chr7:1052155 Csa02g01405 Csa-Chr2:13428092 1.51E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00118 - - csv:101211601 538.88