Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00121 ATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACGCTGGAGATTGGAATGGAATATAGAACAGTCTCTGGAGTTGCTGGTCCCTTGGTTATTCTGGACAAAGTCAAGGGACCTAAATTTCAGGAGATTGTTAATATTCGTCTAGGAGATGGATCAACCAGGCGTGGTCAAGTCCTGGAAGTGGATGGGGAGAAAGCTGTTGTTCAGGTATTCGAAGGAACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACCGGAGAGGTTTTGAAAACTCCAGTCTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAGCCCATTGATAATGGTCCTCCTATCTTGCCTGAGGCGTACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAGAGAACATATCCTGAAGAAATGATACAGACTGGAATTTCTACAATTGATGTCATGAATTCCATTGCTAGAGGGCAAAAGATCCCCCTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATATGTCGTCAGGCTGGCTTAGTTAAGCGGTTGGAGAAATCCAACGATCTTCTTGAGGGTGGTGAAGAGGACAACTTTGCTATTGTTTTTGCTGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTCAAACGTGATTTTGAAGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAGCGTATCATCACCCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTACTTGTCATACTGACAGATATGAGTTCTTATGCTGATGCCCTTCGTGAGGTGTCTGCTGCACGAGAGGAAGTGCCTGGAAGGCGTGGATACCCTGGTTATATGTATACTGATCTTGCTACAATCTATGAACGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAAATCCCAATCCTCACCATGCCTAACGATGATATTACACATCCTACTCCCGATCTTACTGGCTATATCACTGAGGGACAGATCTACATCGACAGGCAGCTTTATAACAGACAGATATACCCACCAATTAATGTCCTCCCTTCATTGTCTCGTCTCATGAAGAGTGCCATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTGTATTTGGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCACTCAAGGAGCTTACGATACTCGAAACATTTTCCAATCACTTGACCTGGCATGGACACTGCTTCGTATTTTCCCTCGTGAACTTCTGCATCGTATACCTGCAAAGACTCTTGATCTGTTTTACAGCCGAGAATCTGCAAATTGA 1467 43.69 MGVEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDLFYSRESAN* 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1064569 1071345 + CsaV3_7G001210.1 Csa07g00121 535684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00121 488 CDD V_A-ATPase_B 92 379 - -
Csa07g00121 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Csa07g00121 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Csa07g00121 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Csa07g00121 488 Gene3D - 29 488 - -
Csa07g00121 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Csa07g00121 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Csa07g00121 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 2 488 IPR022879 -
Csa07g00121 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Csa07g00121 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Csa07g00121 488 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 487 IPR005723 GO:0033180|GO:0046961|GO:1902600
Csa07g00121 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Csa07g00121 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 2 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02662 Csa-Chr5:27603965 Csa07g00121 Csa-Chr7:1064569 1.85E-27 dispersed
Csa07g00121 Csa-Chr7:1064569 Csa07g02282 Csa-Chr7:21243676 1.46E-21 dispersed
Csa07g00121 Csa-Chr7:1064569 Csa05g02046 Csa-Chr5:23779944 2.35E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00121 K02147 - csv:101211838 964.526