Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00124 ATGGTGAAGTTGTTTACTAGTGGAGTAAGGCATCTTTTTGTAACGGTCTTTCTCTCTACGGCGGCGGCGATTATGGTGTTGCCGGCGATAACCGACGTCACCATGGCGGCGCTCTGTCCCGGCCGTGATGAATGCTCTCTCGCCATCTATCTCACCGGTTCCCAGCAGGCGCTATCAGGATTTGGAGCGGTAGTGATAACGCCACTGCTAGGGAATTTGTCGGACAAATACGGAAGGAAAGCCCTGCTTACATTACCTACCGCAATCTCCATTATCCCACTCGCGATATTGGCATACAGCAGGGAGAGAAGGTTCTTCTATGCATATTACGCTACGAGGACTCTCACTGCCATGGTCTCTGAAGGAACTGCTGCTTCCCTTGCTCTCGCTTATCTGGCAGACAACACTTCACTTGCAAATCGAGCTTCCGCATTTGGTTTGTTTACTGGAGTTTGCTCTGCTGCTTTTGTTTGCGGAACCTTAGCATCTCGCTTCCTCGCTACTGACTACATTTTTCCGATTGCTGCAGTATTCTCCATGGTCGCAACTGTATACATGAGAATTTTTCTCAAGGATCGTTTGCCTGGTAGAAGTGATTTAGTACAGCCAATGTTGAAGGAAGAAGTGCCGGAATTAACCGACCGTGAGGACGATGGTGGTGAATTGCCGAGACCGACGCAACCTTTCAGAAAGATGCCAACTCTGCATGATGTTATTACCTTATTCAAGAGCAGTACACTACTTTCAAAAGCCGCAGTTGTTGTATTCTTTACTGGCCTCGGTGAGGGAGGGATTCAAGCCTCTATATTGTACTATTTCAAAGCTCGATTTCACTTTGATAAGGACCAGTTCGCAGATTTGATGCTACTTAATGGGGTGGCAGGAACCGTCTCGCAGCTTGTTTTGATGCCCCTGTTGGTTCCTGTTCTATCTGAAGATAAGCTACTTTCATTAGGTCTTTTGGTGGGAAGCATCGGTACGGTCATTAACAGCATTGCCTGGGCAATTTGGGTTCCTTATGCTGTAACTATATTTTTTATTTTCTCTGTTTTTGTGAGCCCATGTCTACGCAGCATTGTATCAAAACAAGTTAGTCAATATGAGCAGGGGAAGATACAAGGATGCCTTTCAGGGTTAAGCTCTCTCGCCCAAATTGCAGCTCCCATAATTTTCAGTCCTCTTACAGCTTTATTCTTGTCTGACCATCCACCCTTCTACTTCCCCGGCTTCAGCCTTTTGTGTATCGCCATCACTTCAGTGATTGCTTTGATTCTAAGCCTCATGATGATGGCCTCCCCTAGTAGCTTAAGTCAACAACCCAGTATCAGTGGCAGCATAGAAGCCTAG 1347 46.62 MVKLFTSGVRHLFVTVFLSTAAAIMVLPAITDVTMAALCPGRDECSLAIYLTGSQQALSGFGAVVITPLLGNLSDKYGRKALLTLPTAISIIPLAILAYSRERRFFYAYYATRTLTAMVSEGTAASLALAYLADNTSLANRASAFGLFTGVCSAAFVCGTLASRFLATDYIFPIAAVFSMVATVYMRIFLKDRLPGRSDLVQPMLKEEVPELTDREDDGGELPRPTQPFRKMPTLHDVITLFKSSTLLSKAAVVVFFTGLGEGGIQASILYYFKARFHFDKDQFADLMLLNGVAGTVSQLVLMPLLVPVLSEDKLLSLGLLVGSIGTVINSIAWAIWVPYAVTIFFIFSVFVSPCLRSIVSKQVSQYEQGKIQGCLSGLSSLAQIAAPIIFSPLTALFLSDHPPFYFPGFSLLCIAITSVIALILSLMMMASPSSLSQQPSISGSIEA* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1090953 1101853 + CsaV3_7G001240.1 Csa07g00124 535687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00124 448 ProSitePatterns Sugar transport proteins signature 1. 70 87 IPR005829 GO:0016021|GO:0022857|GO:0055085
Csa07g00124 448 Gene3D MFS general substrate transporter like domains 8 433 IPR036259 -
Csa07g00124 448 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 8 439 - -
Csa07g00124 448 PRINTS Tetracycline resistance protein signature 58 74 IPR001958 GO:0022857
Csa07g00124 448 PRINTS Tetracycline resistance protein signature 312 333 IPR001958 GO:0022857
Csa07g00124 448 PRINTS Tetracycline resistance protein signature 337 357 IPR001958 GO:0022857
Csa07g00124 448 PRINTS Tetracycline resistance protein signature 372 395 IPR001958 GO:0022857
Csa07g00124 448 SUPERFAMILY MFS general substrate transporter 13 421 IPR036259 -
Csa07g00124 448 CDD MFS_SLC46_TetA_like 12 428 - -
Csa07g00124 448 Pfam Major Facilitator Superfamily 12 388 IPR011701 GO:0022857|GO:0055085
Csa07g00124 448 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 8 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00124 - - - csv:101206942 801.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01725 Csa-Chr2:16937236 Csa07g00124 Csa-Chr7:1090953 2.46E-140 dispersed
Csa02g01726 Csa-Chr2:16947569 Csa07g00124 Csa-Chr7:1090953 6.29E-129 dispersed
Csa06g00416 Csa-Chr6:3615844 Csa07g00124 Csa-Chr7:1090953 1.27E-66 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g211 . . . . . Bpe12g00132 . . Cmo19g00768 . . . . Car20g00636 . . Cpe15g00610 Bhi05g01676 Tan02g0650 . . Hepe02g0405 . . Cla02g00405 Cam02g0410 Cec02g0410 Cco02g0427 Clacu02g0413 Cmu02g0409 Cre02g0744 Cone12ag1249 . . . . Csa07g00124 . Cme01g01232 Blo04g00585 Blo13g00494 Bda15g01021 Bda14g00627 Bpe15g00800 . . . . . . . Cma19g00755 . Car19g00589 Cpe16g00333 Cpe05g01357 . . . . . . . Cla02g01087 Cam02g1163 Cec02g1162 Cco02g1210 Clacu02g1155 Cmu02g1117 Cre02g1420 Lsi11g01219 . Chy01g00659 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00124 Csa_Chr07 FPKM 5.150943 5.560187 10.668355 11.161824 15.234357 11.831618 16.510799 7.184427 8.350667 7.863791