Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00127 ATGTCCAATTTGGTGATGGTTTGCCGGAGAATTTGGTCTACGAAGACCTTTCACGCAGCTGCTTTAACAGTCTTCAATGCTCAGCTGCAGTTTCATCGTCGTCCAGTTCTATTCAACATTGTTTTTCAGTTCAAACAGACTTGTTTCTCTTCTTCGAAAGCCAACAGTTTTCAGGTTCCGGAATTCTATTCTCTGAACAAGAAAATATCTTATTTGATTCGAACAGGCCGAATAAATGAAGCAAGGGAATTGTTTGATAGCACTGAGCATTGGAATACGATCACATGGAATAGGATGATCACTGCGTATGTGAAAAGAAGAGAGATGTTGAAAGCACGCCAGTTGTTCGAGGAAATGCCAAACAGAGACATTGTATCGTGGAATTTAATGTTATCAGGTTATATATCTTGTGGTGGAAAGTTCGTTGAGAGGGCACGGAATATGTTCGATCAAATGCCAGAAACTGATTGTGTTTCATGGAACACAATGTTGAGTGGGTATGCTAAGAGTGGGATGATGGATAAAGCAGAAGAGCTTTTTAATGAAATGCCTGAGCGTAATGTTGTCTCATGGAATGCCATGGTTTCTGGTTATTTAATGAATGGTCATGTGGAAAAAGCTATCGAGTTCTTTAAGTTGATGCCGAAACGAGACTCTGCTTCTCTTAGGGCATTGATTTCTGGTCTGATTCAGAATGACAAGTTGGTTGAAGCTGAAAGGATTCTGCTTCAATATGGTGGGAATGTTGGTAAAGGAGATCTTGTTGATGCTTATAATACTTTGATTGCTGGATATGGCCAGAAAGGAATGGCCTATGAAGCCCGGAAACTGTTTGATCGCATCCCTTTGTGTTGTGACTGTGGCTACTCTAGGAGGAATGTGATTTCATGGAACTCTATGATAATGTGCTATGTGAGAGCTGGTGACATAGTCTCTGCTCGAGAACTATTCGATAAAATGGTTGAGCGAGATACTTTTTCATGGAACACTATGATCAGTGGCTATGTCCAGATCTTGGATATGAAAGAGGCCTCAAATCTTTTCAGTAGAATGCCAGAGCCCGATACCCTTTCTTGGAATATGATGATATCTGGGTTTTCTGAGATAGGTAGTTTGAAACTGGCTCATGACTTGTTTAAAAGGATACCAGAGAAAAGCCTTGTCTCATGGAATTCCATGATATCTGGCTATGAGAAAAATGAAGACTATAAAGGAGCAATGAACATCTTTTTGCAGATGCAACTTGAAGGTAAAAAACCAGATAGGCACACTTTATCATCAATTCTAAGTGCTTGTGCTGGGTTGGTAGATCTGGTTTTAGGAACTCAGATTCATCAACTAGTTACAAAAGCTTTTATTGCAGATTTACCCATAAACAACTCTCTTGTTACAATGTACTCAAGATGTGGAGCAATCGTTGAGGCAAGGATGGTTTTTGATGAAATGAATCTTCAGAGAGATGTCATTTCTTGGAATGCGATGATTGGCGGGTATGCCTATCATGGCTTTGCAACAGAGGCTCTTCAACTATTTGATTTGATGAAACAATGTAATGTGCAGCCTTCTTATATCACATTCATTTCTGTTCTGAATGCTTGTGCTCATGCTGGATTGATTGAGGAAGGCAGGAGAGAATTCAACTCCATGGTTAACACGCATGGGATCAAGCCACAAGTCGAACACTATGCAGCCCTTGTCGACATCATCGGTCGACATGGACAACTTGAAGAAGCAATGAGTTTGATTAATAGTATGCCATGTGAACCGGATAAAGCAGTGTGGGGTGCATTACTGGGTGCTTGTAAGGTGCATAACAATGTTGAGATGGCTCGAGCAGCGGCTGAAGCGTTAATGAAGCTCCAACCTGAAAGCTCAGCTCCATATGTGCTGCTACATAATATGTATGCCGATGTGGGACGCTGGGATGATGCTGCTGAAATGAGAACAATGATGGAGAAGAACAATGTTCAAAAGGATGCTGGATATAGTCGGGTGGATTCTTATTGCTAA 2010 41.0 MSNLVMVCRRIWSTKTFHAAALTVFNAQLQFHRRPVLFNIVFQFKQTCFSSSKANSFQVPEFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVDSYC* 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1123383 1126614 - CsaV3_7G001270.1 Csa07g00127 535690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00127 669 Gene3D Tetratricopeptide repeat domain 121 251 IPR011990 GO:0005515
Csa07g00127 669 Gene3D Tetratricopeptide repeat domain 443 666 IPR011990 GO:0005515
Csa07g00127 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Csa07g00127 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Csa07g00127 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Csa07g00127 669 PANTHER OS07G0578800 PROTEIN-RELATED 62 666 IPR045215 GO:0003723|GO:0009451
Csa07g00127 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 385 IPR002885 -
Csa07g00127 669 Gene3D Tetratricopeptide repeat domain 252 338 IPR011990 GO:0005515
Csa07g00127 669 Gene3D Tetratricopeptide repeat domain 339 439 IPR011990 GO:0005515
Csa07g00127 669 PANTHER OS06G0228900 PROTEIN 62 666 - -
Csa07g00127 669 SUPERFAMILY TPR-like 66 209 IPR011990 GO:0005515
Csa07g00127 669 Gene3D Tetratricopeptide repeat domain 36 120 IPR011990 GO:0005515
Csa07g00127 669 TIGRFAM PPR: pentatricopeptide repeat domain 489 522 IPR002885 -
Csa07g00127 669 TIGRFAM PPR: pentatricopeptide repeat domain 94 125 IPR002885 -
Csa07g00127 669 TIGRFAM PPR: pentatricopeptide repeat domain 257 281 IPR002885 -
Csa07g00127 669 TIGRFAM PPR: pentatricopeptide repeat domain 358 386 IPR002885 -
Csa07g00127 669 TIGRFAM PPR: pentatricopeptide repeat domain 189 218 IPR002885 -
Csa07g00127 669 TIGRFAM PPR: pentatricopeptide repeat domain 326 352 IPR002885 -
Csa07g00127 669 TIGRFAM PPR: pentatricopeptide repeat domain 158 189 IPR002885 -
Csa07g00127 669 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Csa07g00127 669 TIGRFAM PPR: pentatricopeptide repeat domain 295 324 IPR002885 -
Csa07g00127 669 Pfam PPR repeat 189 217 IPR002885 -
Csa07g00127 669 Pfam PPR repeat 460 482 IPR002885 -
Csa07g00127 669 Pfam PPR repeat 326 352 IPR002885 -
Csa07g00127 669 Pfam PPR repeat 358 385 IPR002885 -
Csa07g00127 669 Pfam PPR repeat 158 188 IPR002885 -
Csa07g00127 669 Pfam PPR repeat 295 323 IPR002885 -
Csa07g00127 669 Pfam PPR repeat 94 123 IPR002885 -
Csa07g00127 669 Pfam PPR repeat 562 586 IPR002885 -
Csa07g00127 669 Pfam PPR repeat 257 281 IPR002885 -
Csa07g00127 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Csa07g00127 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Csa07g00127 669 Pfam E motif 604 665 IPR046848 -
Csa07g00127 669 Pfam PPR repeat family 486 534 IPR002885 -
Csa07g00127 669 Pfam PPR repeat family 386 433 IPR002885 -
Csa07g00127 669 SUPERFAMILY TPR-like 167 649 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00127 - - - csv:101207182 1354.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00127 Csa-Chr7:1123383 Csa01g00425 Csa-Chr1:2658376 1.05E-20 dispersed
Csa07g00127 Csa-Chr7:1123383 Csa03g01691 Csa-Chr3:12669403 6.29E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g213 . . . . . . . . . Cmo11g01756 . . . . . . . Bhi05g01672 . . . Hepe02g0402 . . Cla02g00403 . . . . . . . Cone8ag1304 . . . Csa07g00127 . . . . . . Bpe15g00799 . Bma03g00618 . . . . Cma11g01362 . Car11g01386 . . . . . . . . . . . . . . . . . Lsi11g01222 . Chy01g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014695 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00127 Csa_Chr07 FPKM 27.071428 0.0 44.113323 38.28233 53.525764 56.090153 53.050426 15.578539 15.871892 22.74556