Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00130 ATGGATACGCTCAAGAAATCTTTCAAAGGTAATGTATCTTTCAAGCATACAAGGAAAATTTCTGCTGGAGGAGCCGGCAGCGAAATCAATCACGAAGAGCTCCCCATTCTTCTCAATCACCAAACTACGGATCATAGTCGTTGTCTTAGGGATCGTCATCCGGTGAACGATTCTGATACATCTGACAGAACAGAGGTCATTCTCAAGATTGATGGTGGTGGTTCGTCTTCAGCTGTCTCCAGATCTCTGGACTCTGCTGGCAATAATGGCGGGAATGTTTGGCGGGAATCCAGGTACGATTTCTGGAACAATGATGAAATTGGAATTGGGGAAAGTGCGAGAATGGGTGATAATAGTGGTGTTGATAGAAACGAGGGATTTGAATTTGTACAGACTGGTTATGGAATGGAGGATCCTCCTACGAAGCTGATTGGTGACTTTCTTTGTAAGCAGAAAATTGAGGGAGAAACGACTTTGGATATGGATTTGGAAATGGAGGAATTGAAGCCAAATAGGATTGTACCTCCATTGGCAGAGTCGCCTTTGAGTCAAACTTCTAAGGATCTTAAAGTTTCGTTTCAGCACGACTCGACAGAAATTTCGAGCAATGATCAGTCAATAAGAAGGCGGAATAGAGATTCAAATGATTTGAAAGAAGAGTCTAAAGGAGGACAATCGCCACGGCAACAACCGCACCATGAACGTCTTGGATCTCCAACTATCTCTGGGGTTCAGAACGAGTCTCTTGCTGAGGCTATGAGATGCGCATCTAACTTGTCCTTTCATAGTGAGCTTTCATTTCAAAGGAAATCTAATTTACTGAGGGCGAAAACCAAGTCAAGATTGATAGACCCACCTGCCGAGCCTGACCGGCTCTCTGGCCTCATTCCTAAGTCAGGTCAACTACGATCTGGGTTTCTAGGGAAGATTGAAGACGACGACGATGACCCCTTTCTAGAGGATGACCTTCCAGACGAATTTAAAAGGGGAAATTTCAGTGCTCTAACTGTTCTACAATGGGTTAGTTTGATTATAATCACTGCAGCTTTAATCTGCACTCTTTCTGTTCCTTATTTGAGGGAAAAGAGTCTATGGGAGTTGGATATATGGAAATGGGAGGTGATGATTTTTATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATTGGTGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTTTGTATTTTGTATATGGGGTTAGAAAACCAGTGCAGAATTGTTTATGGTTAGGCCTTGTTCTCATCGCTTGGCATTTGTTGTTCAATAAACGGGTTGAGAAACAAACCAACACCAGTATACTCAATTATGTGAGCAGAGTTTTAGTTTGTCTCTTGATAAGCACACTGATATGGCTTGTGAAAACCTTGATGGTGAAGGTGCTTGCCTCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAATCAATATGTCATTGAGACGCTCTCGGGTCCACCTCTGGTTGAAATACGGAAGAATGAGGAAGAAGAGGAGAGGATTGCAGATGAAGTCCAAAAATTACAGAATGCAGGAATTATCATACCCCCTGATCTCAAGGCTGCAACCTTTGCTTCTATAAAGAGTGGAAGGGAAATAGGTAGTGGACGGACCCACAAAAGTTTTTGTGCAAAAAGTTGCAAACTCTCTCGAGCACTGACCAAAAATAGGAACGATGGAATAACGATTGACCATTTGCACAAACTAAGTACGAAGAACGTCTCTGCCTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAAATACGGGGGCCGTGTCTTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCAAAAAAGATTTTTCAGAATGTGGCTCATCGTGGATATAAGTACATATACCTGGATGACTTAGTGCGGTTCATGAGAGAAGACGAGGTTCTTAAAACGATGAGTCTCTTTGAAGGAGCCGCTGAAAACCAGAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAATGCGTTCAGGGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTACATCACATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTATTAGGAATTGCCTCCAGCAAATTTTTCATCTTCCTTAGTTCTCAAATAGTGGTTGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCGTTTGACGTTGGAGATCGCTGCGAAATCGATGGAATGCAGATGGTTGTAGAGGAAATGAACATTTTGACTACTGTATTCTTGAGATACGACAACTTGAAGGTTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCCACAACTTCTACCGTAGTCCTGACATGGGCGAATCAATTGAATTCCTTGTCCATATCGCTACACCAGCTGAGAAAATTACGGCCATGAAACACAGAATTATAAGTTACATTGAAGGCAACAAAGAACATTGGTATCCTGCTCCTATGATTGTGTTCAAAGATATAGATGGTTTAAACAAGGTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCATCAAGACTCAGGGGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAAGAAGTTGTCAAAGTCTGTCAAGAGCTCGACATTCAATATCGTCTATTGCCAATTGATATCAATATCCGTTCATTGCCTTCTTCTGCACCCTCCATTGGCTTTCCTTCAAATTGGACTTCCCCTGCAAGTTGA 2868 41.63 MDTLKKSFKGNVSFKHTRKISAGGAGSEINHEELPILLNHQTTDHSRCLRDRHPVNDSDTSDRTEVILKIDGGGSSSAVSRSLDSAGNNGGNVWRESRYDFWNNDEIGIGESARMGDNSGVDRNEGFEFVQTGYGMEDPPTKLIGDFLCKQKIEGETTLDMDLEMEELKPNRIVPPLAESPLSQTSKDLKVSFQHDSTEISSNDQSIRRRNRDSNDLKEESKGGQSPRQQPHHERLGSPTISGVQNESLAEAMRCASNLSFHSELSFQRKSNLLRAKTKSRLIDPPAEPDRLSGLIPKSGQLRSGFLGKIEDDDDDPFLEDDLPDEFKRGNFSALTVLQWVSLIIITAALICTLSVPYLREKSLWELDIWKWEVMIFILICGRLVSGWGIRIGVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNKRVEKQTNTSILNYVSRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIRKNEEEEERIADEVQKLQNAGIIIPPDLKAATFASIKSGREIGSGRTHKSFCAKSCKLSRALTKNRNDGITIDHLHKLSTKNVSAWNMKRLLNIVRYGSISTLDEQIRGPCLDDESTTEIKSEREAKAAAKKIFQNVAHRGYKYIYLDDLVRFMREDEVLKTMSLFEGAAENQRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFIFLSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGMQMVVEEMNILTTVFLRYDNLKVIIPNSVLATKLIHNFYRSPDMGESIEFLVHIATPAEKITAMKHRIISYIEGNKEHWYPAPMIVFKDIDGLNKVKLAVWLSHRMNHQDSGERWARRSVLVEEVVKVCQELDIQYRLLPIDINIRSLPSSAPSIGFPSNWTSPAS* 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1148400 1152847 - CsaV3_7G001300.1 Csa07g00130 535693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00130 955 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 101 IPR016688 -
Csa07g00130 955 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 118 939 IPR016688 -
Csa07g00130 955 PIRSF Memb_At2g17000 51 955 IPR016688 -
Csa07g00130 955 Gene3D - 778 827 IPR023408 -
Csa07g00130 955 SUPERFAMILY Sm-like ribonucleoproteins 768 827 IPR010920 -
Csa07g00130 955 MobiDBLite consensus disorder prediction 202 229 - -
Csa07g00130 955 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 101 - -
Csa07g00130 955 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 118 939 - -
Csa07g00130 955 MobiDBLite consensus disorder prediction 192 241 - -
Csa07g00130 955 Pfam Mechanosensitive ion channel 720 924 IPR006685 GO:0016020|GO:0055085
Csa07g00130 955 Coils Coil 509 529 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02572 Csa-Chr4:25284708 Csa07g00130 Csa-Chr7:1148400 9.70E-141 dispersed
Csa04g02573 Csa-Chr4:25298716 Csa07g00130 Csa-Chr7:1148400 2.71E-52 dispersed
Csa04g02574 Csa-Chr4:25300087 Csa07g00130 Csa-Chr7:1148400 1.19E-81 dispersed
Csa06g01060 Csa-Chr6:8687901 Csa07g00130 Csa-Chr7:1148400 0 dispersed
Csa07g00130 Csa-Chr7:1148400 Csa01g02964 Csa-Chr1:25997051 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00130 K22048 - csv:101207426 1835.46