Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00130 ATGGATACGCTCAAGAAATCTTTCAAAGGTAATGTATCTTTCAAGCATACAAGGAAAATTTCTGCTGGAGGAGCCGGCAGCGAAATCAATCACGAAGAGCTCCCCATTCTTCTCAATCACCAAACTACGGATCATAGTCGTTGTCTTAGGGATCGTCATCCGGTGAACGATTCTGATACATCTGACAGAACAGAGGTCATTCTCAAGATTGATGGTGGTGGTTCGTCTTCAGCTGTCTCCAGATCTCTGGACTCTGCTGGCAATAATGGCGGGAATGTTTGGCGGGAATCCAGGTACGATTTCTGGAACAATGATGAAATTGGAATTGGGGAAAGTGCGAGAATGGGTGATAATAGTGGTGTTGATAGAAACGAGGGATTTGAATTTGTACAGACTGGTTATGGAATGGAGGATCCTCCTACGAAGCTGATTGGTGACTTTCTTTGTAAGCAGAAAATTGAGGGAGAAACGACTTTGGATATGGATTTGGAAATGGAGGAATTGAAGCCAAATAGGATTGTACCTCCATTGGCAGAGTCGCCTTTGAGTCAAACTTCTAAGGATCTTAAAGTTTCGTTTCAGCACGACTCGACAGAAATTTCGAGCAATGATCAGTCAATAAGAAGGCGGAATAGAGATTCAAATGATTTGAAAGAAGAGTCTAAAGGAGGACAATCGCCACGGCAACAACCGCACCATGAACGTCTTGGATCTCCAACTATCTCTGGGGTTCAGAACGAGTCTCTTGCTGAGGCTATGAGATGCGCATCTAACTTGTCCTTTCATAGTGAGCTTTCATTTCAAAGGAAATCTAATTTACTGAGGGCGAAAACCAAGTCAAGATTGATAGACCCACCTGCCGAGCCTGACCGGCTCTCTGGCCTCATTCCTAAGTCAGGTCAACTACGATCTGGGTTTCTAGGGAAGATTGAAGACGACGACGATGACCCCTTTCTAGAGGATGACCTTCCAGACGAATTTAAAAGGGGAAATTTCAGTGCTCTAACTGTTCTACAATGGGTTAGTTTGATTATAATCACTGCAGCTTTAATCTGCACTCTTTCTGTTCCTTATTTGAGGGAAAAGAGTCTATGGGAGTTGGATATATGGAAATGGGAGGTGATGATTTTTATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATTGGTGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTTTGTATTTTGTATATGGGGTTAGAAAACCAGTGCAGAATTGTTTATGGTTAGGCCTTGTTCTCATCGCTTGGCATTTGTTGTTCAATAAACGGGTTGAGAAACAAACCAACACCAGTATACTCAATTATGTGAGCAGAGTTTTAGTTTGTCTCTTGATAAGCACACTGATATGGCTTGTGAAAACCTTGATGGTGAAGGTGCTTGCCTCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAATCAATATGTCATTGAGACGCTCTCGGGTCCACCTCTGGTTGAAATACGGAAGAATGAGGAAGAAGAGGAGAGGATTGCAGATGAAGTCCAAAAATTACAGAATGCAGGAATTATCATACCCCCTGATCTCAAGGCTGCAACCTTTGCTTCTATAAAGAGTGGAAGGGAAATAGGTAGTGGACGGACCCACAAAAGTTTTTGTGCAAAAAGTTGCAAACTCTCTCGAGCACTGACCAAAAATAGGAACGATGGAATAACGATTGACCATTTGCACAAACTAAGTACGAAGAACGTCTCTGCCTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAAATACGGGGGCCGTGTCTTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCAAAAAAGATTTTTCAGAATGTGGCTCATCGTGGATATAAGTACATATACCTGGATGACTTAGTGCGGTTCATGAGAGAAGACGAGGTTCTTAAAACGATGAGTCTCTTTGAAGGAGCCGCTGAAAACCAGAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAATGCGTTCAGGGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTACATCACATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTATTAGGAATTGCCTCCAGCAAATTTTTCATCTTCCTTAGTTCTCAAATAGTGGTTGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCGTTTGACGTTGGAGATCGCTGCGAAATCGATGGAATGCAGATGGTTGTAGAGGAAATGAACATTTTGACTACTGTATTCTTGAGATACGACAACTTGAAGGTTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCCACAACTTCTACCGTAGTCCTGACATGGGCGAATCAATTGAATTCCTTGTCCATATCGCTACACCAGCTGAGAAAATTACGGCCATGAAACACAGAATTATAAGTTACATTGAAGGCAACAAAGAACATTGGTATCCTGCTCCTATGATTGTGTTCAAAGATATAGATGGTTTAAACAAGGTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCATCAAGACTCAGGGGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAAGAAGTTGTCAAAGTCTGTCAAGAGCTCGACATTCAATATCGTCTATTGCCAATTGATATCAATATCCGTTCATTGCCTTCTTCTGCACCCTCCATTGGCTTTCCTTCAAATTGGACTTCCCCTGCAAGTTGA 2868 41.63 MDTLKKSFKGNVSFKHTRKISAGGAGSEINHEELPILLNHQTTDHSRCLRDRHPVNDSDTSDRTEVILKIDGGGSSSAVSRSLDSAGNNGGNVWRESRYDFWNNDEIGIGESARMGDNSGVDRNEGFEFVQTGYGMEDPPTKLIGDFLCKQKIEGETTLDMDLEMEELKPNRIVPPLAESPLSQTSKDLKVSFQHDSTEISSNDQSIRRRNRDSNDLKEESKGGQSPRQQPHHERLGSPTISGVQNESLAEAMRCASNLSFHSELSFQRKSNLLRAKTKSRLIDPPAEPDRLSGLIPKSGQLRSGFLGKIEDDDDDPFLEDDLPDEFKRGNFSALTVLQWVSLIIITAALICTLSVPYLREKSLWELDIWKWEVMIFILICGRLVSGWGIRIGVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNKRVEKQTNTSILNYVSRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIRKNEEEEERIADEVQKLQNAGIIIPPDLKAATFASIKSGREIGSGRTHKSFCAKSCKLSRALTKNRNDGITIDHLHKLSTKNVSAWNMKRLLNIVRYGSISTLDEQIRGPCLDDESTTEIKSEREAKAAAKKIFQNVAHRGYKYIYLDDLVRFMREDEVLKTMSLFEGAAENQRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFIFLSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGMQMVVEEMNILTTVFLRYDNLKVIIPNSVLATKLIHNFYRSPDMGESIEFLVHIATPAEKITAMKHRIISYIEGNKEHWYPAPMIVFKDIDGLNKVKLAVWLSHRMNHQDSGERWARRSVLVEEVVKVCQELDIQYRLLPIDINIRSLPSSAPSIGFPSNWTSPAS* 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1148400 1152847 - CsaV3_7G001300.1 Csa07g00130 535693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00130 955 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 101 IPR016688 -
Csa07g00130 955 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 118 939 IPR016688 -
Csa07g00130 955 PIRSF Memb_At2g17000 51 955 IPR016688 -
Csa07g00130 955 Gene3D - 778 827 IPR023408 -
Csa07g00130 955 SUPERFAMILY Sm-like ribonucleoproteins 768 827 IPR010920 -
Csa07g00130 955 MobiDBLite consensus disorder prediction 202 229 - -
Csa07g00130 955 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 101 - -
Csa07g00130 955 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 118 939 - -
Csa07g00130 955 MobiDBLite consensus disorder prediction 192 241 - -
Csa07g00130 955 Pfam Mechanosensitive ion channel 720 924 IPR006685 GO:0016020|GO:0055085
Csa07g00130 955 Coils Coil 509 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00130 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101207426 1835.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02572 Csa-Chr4:25284708 Csa07g00130 Csa-Chr7:1148400 9.70E-141 dispersed
Csa04g02573 Csa-Chr4:25298716 Csa07g00130 Csa-Chr7:1148400 2.71E-52 dispersed
Csa04g02574 Csa-Chr4:25300087 Csa07g00130 Csa-Chr7:1148400 1.19E-81 dispersed
Csa06g01060 Csa-Chr6:8687901 Csa07g00130 Csa-Chr7:1148400 0 dispersed
Csa07g00130 Csa-Chr7:1148400 Csa01g02964 Csa-Chr1:25997051 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00877 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.0 5.1e-152 534.6
Csa02g02208 . 10 675 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.3e-195 679.1
Csa03g00687 . 63 723 Mechanosensitive Ion Channel Family AT5G10490 56.4 1.8e-184 642.9
Csa02g02208 . 10 667 Mechanosensitive Ion Channel Family AT1G58200 58.7 2.2e-198 689.1
Csa03g00687 . 43 505 Mechanosensitive Ion Channel Family AT1G58200 64.6 1.8e-168 589.7
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G53470 52.2 1.2e-236 816.6
Csa06g01060 . 43 870 Mechanosensitive Ion Channel Family AT3G14810 50.3 1.1e-226 783.5
Csa07g00130 . 59 955 Mechanosensitive Ion Channel Family AT1G78610 55.9 2.9e-272 934.9
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G78610 56.3 6.3e-259 890.6
Csa04g02574 . 18 272 Mechanosensitive Ion Channel Family AT1G78610 50.6 8.4e-70 262.3
Csa07g00130 . 269 943 Mechanosensitive Ion Channel Family AT2G17000 58.3 6.7e-221 764.2
Csa06g01060 . 217 877 Mechanosensitive Ion Channel Family AT2G17000 57.1 1.7e-216 749.6
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G19520 56.6 2.6e-83 307.0
Csa01g02964 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.1 4.2e-195 678.3
Csa04g02572 . 798 1452 Mechanosensitive Ion Channel Family AT5G12080 54.3 3.7e-191 665.2
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G12080 65.2 2.4e-97 353.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00130 Csa_Chr07 FPKM 3.719854 3.240469 5.082519 4.726476 10.101357 9.933219 11.004107 3.82426 3.64923 4.413996