Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00131 ATGGTTATGGAGGATAACGAGAGCTGTGGAAGTAGAGCGTACGACTTGTTATCACCGGCGCAAAGTCGGCAACAGAGGCAGAAGTTTGAGGTCTACAATGAGGTTCTACGGCGTTTGAAGGATTCCAACAACGAGGAGGCTATTCAGCCTGGTTTTGATGACGAACTATGGGTTCACTTCAATCGTCTTCCCACTCGATATGCTCTAGACGTAAATGTGGAGAGGGCAGAAGATGTTCTCATGCATAAAAGATTATTGCAATTCGCTCACGATCCTGCAAATCGACCTGCAATTGAAGTCCGCCTTGTGCAGGTCCAAGCCGTTTCTGATGAGCATTCTGCTGACTTTGCTGATTCATGTCCTGTAAAAGACACTGATCATAATTCTTCAAATTGCTTGAGCAGACAGAGCATGCATCCACCACCTGCCTTTGGGTCATCTCCTAACCTCGAGGCCTTGGCTCTTGAAGCTAATAATACTCAGGATCTGGAGGTTGATCAGTCTGTACATGCCAGAACACAGTTTTTCCGGCCAATGCATGAAATCACCTTCTCTACGGATGATAAGCCGAAACTTCTTAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGGCTCAACATCCAGGAGGCACATGCATTTTCCACTGTTGATGGTTACTCATTGGATGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACAGAGCGGCTGAAGACTGCATTAGAGAGTGAAGTTTTACTGGTTGAGAGGCGAGGTTGGCCAAATCAGAAATCCTCGTCTCCTGTGGGGGAACTCGATATAACAGCTAAATGTGAGTCTGATCGGGTAGAAATACCCACAGATGGGACTGACGTATGGGAAATTAATCCTAGACATTTGAAGTTTGAGCATAAAGTTGCATCTGGTTCATATGGGGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTGGCTATTAAAGTTCTCAAAACTGAACGTGTAAATACAGATATGCAAAGTGAGTTTGCCCAGGAGGTATATATTATGAGAAAAGTAAGGCACAAGAATGTCGTACAGTTTATAGGTGCATGTACTAAGCCCCCAAGCTTGTGCATTGTAACAGAATTTATGTCTGGTGGTAGTGTCTATGACTATCTACATAAACAAAAGGGGACTTTTAGGCTTCCATCTTTGCTTAAGGTAGCTATTGATGTCTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGAGATCTAAAAGCTGCCAATCTTCTGATGGATGAAAATGAAGTTGTCAAGGTTGCTGATTTCGGTGTTGCCAGAGTAAAAGCTCAATCAGGAGTTATGACCGCAGAAACCGGGACATATCGGTGGATGGCTCCTGAGGTTATTGAACACAAACCCTATGATCACAAGGCTGATGTTTTCAGTTTTGGAATTGTCTTGTGGGAGCTGCTAACTGGAAAGCTACCTTATGAATTCCTAACACCATTACAAGCCGCAGTCGGAGTAGTACAAAAGGGTTTACGGCCTACTATGCCTAAGCACACTAATCCCAAGCTAGCTGACTTGCTAGAAAAATGTTGGCAGCAAGACCCATCTTGCAGGCCTGACTTTTGTGAAATTATCGATATATTGTTGCAGATAACTAAGGAAGTTGCTGAAGAGGGTGAGGATCGAAGAAAGGAGAAAAGTGGAGGATTCCTTTCTGTGTTGAGACGAAACCATCACTGA 1722 43.67 MVMEDNESCGSRAYDLLSPAQSRQQRQKFEVYNEVLRRLKDSNNEEAIQPGFDDELWVHFNRLPTRYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVRLVQVQAVSDEHSADFADSCPVKDTDHNSSNCLSRQSMHPPPAFGSSPNLEALALEANNTQDLEVDQSVHARTQFFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETERLKTALESEVLLVERRGWPNQKSSSPVGELDITAKCESDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKTERVNTDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQKGTFRLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEFLTPLQAAVGVVQKGLRPTMPKHTNPKLADLLEKCWQQDPSCRPDFCEIIDILLQITKEVAEEGEDRRKEKSGGFLSVLRRNHH* 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1153965 1163231 - CsaV3_7G001310.1 Csa07g00131 535694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00131 573 CDD ACT_TyrKc 179 246 - -
Csa07g00131 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Csa07g00131 573 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 20 556 - -
Csa07g00131 573 SUPERFAMILY ACT-like 179 243 IPR045865 -
Csa07g00131 573 SMART serkin_6 293 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00131 573 MobiDBLite consensus disorder prediction 118 148 - -
Csa07g00131 573 CDD STKc_MAP3K-like 299 542 - -
Csa07g00131 573 Gene3D Transferase(Phosphotransferase) domain 1 372 566 - -
Csa07g00131 573 PRINTS Tyrosine kinase catalytic domain signature 367 380 IPR001245 GO:0004672|GO:0006468
Csa07g00131 573 PRINTS Tyrosine kinase catalytic domain signature 404 422 IPR001245 GO:0004672|GO:0006468
Csa07g00131 573 PRINTS Tyrosine kinase catalytic domain signature 450 460 IPR001245 GO:0004672|GO:0006468
Csa07g00131 573 PRINTS Tyrosine kinase catalytic domain signature 469 491 IPR001245 GO:0004672|GO:0006468
Csa07g00131 573 PRINTS Tyrosine kinase catalytic domain signature 513 535 IPR001245 GO:0004672|GO:0006468
Csa07g00131 573 ProSiteProfiles Protein kinase domain profile. 293 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00131 573 Coils Coil 231 251 - -
Csa07g00131 573 Pfam Protein tyrosine and serine/threonine kinase 293 541 IPR001245 GO:0004672|GO:0006468
Csa07g00131 573 MobiDBLite consensus disorder prediction 123 143 - -
Csa07g00131 573 Gene3D Phosphorylase Kinase; domain 1 283 371 - -
Csa07g00131 573 SUPERFAMILY Protein kinase-like (PK-like) 278 542 IPR011009 -
Csa07g00131 573 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 20 556 - -
Csa07g00131 573 ProSiteProfiles ACT domain profile. 181 253 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00046 Csa-Chr3:453919 Csa07g00131 Csa-Chr7:1153965 0 dispersed
Csa03g04310 Csa-Chr3:37721055 Csa07g00131 Csa-Chr7:1153965 0 dispersed
Csa06g00537 Csa-Chr6:4558344 Csa07g00131 Csa-Chr7:1153965 2.14E-153 dispersed
Csa06g01398 Csa-Chr6:11945369 Csa07g00131 Csa-Chr7:1153965 2.36E-46 dispersed
Csa06g03630 Csa-Chr6:29264801 Csa07g00131 Csa-Chr7:1153965 2.20E-74 dispersed
Csa07g00131 Csa-Chr7:1153965 Csa01g00844 Csa-Chr1:5290383 1.13E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78455 PF07714 PK_Tyr_Ser-Thr 2.30E-74 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00131 - - csv:101213048 1162.13