Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00139 ATGGATGATACTAGCAGCAAAGCGTCAAATAAATTGAAAATAGAAGAAGAAGATAGTGATATCAAAGTCCAAATATGGAAATACATATTTGGTTTCGTTGAAATGGCAGTGATAAAATGTGCCATTGAACTCAAAATAGGAGACGTCATTGAAAGCCATGGAGATTCCATGACACTCTCCCAACTCTCTTCTTCTTTAAACTGTTCTCCTTTGCTTCTACATCGCATATTACGGTTTCTTGTACATAGAGGCATTTTCAAAGAAGAAAAAACCACAAAATGCTACTCCCATACGCCCATGTCTCGACTGCTCACAACTACTGGACCAAATAGTATGGCTCCCTTGCATCTCTTGGAAAGCAGCCCTGTGATGATTGCACCATGGCACAACTTGAGTGCATGTGTTAAAGCCAGTGATCATGAGAATGGAAGTCAGCCTTTTGAGATGGCTCATGGGATGGACTTGTGGACTTATGCTGCAGCCAATCCATCACACAGTAGCCTGATCAATGAGAGCATGGCTTGCTTTGCTAGGCTGGTTATTTTGCCTGCAGTTCTCGAAAGGTGTGGGGAGATTTTTGATGGAGTTGGATGTTTGGTGGATGTTGGAGGAGGGAATGGGACTTGTTTGAGTATTTTAGTGAAGGCTTGTCCTTGGATTAAAGGTATTAATTTCGATCTTCCTCATGTTGTGTCTGTTTCAAAGGAGTATGAAGGTATTCAACATGTTGGTGGCAATATGTTTGATTCTGTTCCAAAGGCTGATGCTGCTTTCATTATGGAGGTTCTACATGATTGGGATGATGAGGAATGCATCAAAATTTTGAAAAATTGCAAAGAAGCCATTCCGGAAAAGACAGGAAAAGTGATAATTGTTGAGGTAGTGATCGATGAAAAAGAAGAAATTAGCAAATATTCGGATGCAAGGTTAATGATGGATATGATAATGATGGCCCATACCATTAAGGGGAAAGAAAGAACAAATGAGGAATGGGCCAATGTTCTTCAGAAAGCTGGTTTTAGTTATTATACAATCACTCCTACCTCAACTATCCAATCTGTTATTCAAGCTTTTCCTTGA 1080 39.91 MDDTSSKASNKLKIEEEDSDIKVQIWKYIFGFVEMAVIKCAIELKIGDVIESHGDSMTLSQLSSSLNCSPLLLHRILRFLVHRGIFKEEKTTKCYSHTPMSRLLTTTGPNSMAPLHLLESSPVMIAPWHNLSACVKASDHENGSQPFEMAHGMDLWTYAAANPSHSSLINESMACFARLVILPAVLERCGEIFDGVGCLVDVGGGNGTCLSILVKACPWIKGINFDLPHVVSVSKEYEGIQHVGGNMFDSVPKADAAFIMEVLHDWDDEECIKILKNCKEAIPEKTGKVIIVEVVIDEKEEISKYSDARLMMDMIMMAHTIKGKERTNEEWANVLQKAGFSYYTITPTSTIQSVIQAFP* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1235155 1236998 + CsaV3_7G001390.1 Csa07g00139 535702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00139 359 PIRSF O-mtase 3 359 IPR016461 GO:0008168
Csa07g00139 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 359 IPR016461 GO:0008168
Csa07g00139 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 355 IPR029063 -
Csa07g00139 359 Pfam Dimerisation domain 37 81 IPR012967 GO:0046983
Csa07g00139 359 Gene3D - 7 104 IPR036388 -
Csa07g00139 359 Gene3D Vaccinia Virus protein VP39 107 359 IPR029063 -
Csa07g00139 359 PANTHER O-METHYLTRANSFERASE 10 357 IPR016461 GO:0008168
Csa07g00139 359 CDD AdoMet_MTases 199 296 - -
Csa07g00139 359 Pfam O-methyltransferase domain 128 341 IPR001077 GO:0008171
Csa07g00139 359 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 10 357 - -
Csa07g00139 359 SUPERFAMILY Winged helix DNA-binding domain 14 107 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00139 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101211054 705.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01110 Csa-Chr6:9183736 Csa07g00139 Csa-Chr7:1235155 1.06E-100 dispersed
Csa07g00137 Csa-Chr7:1211675 Csa07g00139 Csa-Chr7:1235155 8.75E-146 dispersed
Csa07g00139 Csa-Chr7:1235155 Csa07g01439 Csa-Chr7:14635714 3.42E-73 dispersed
Csa07g00138 Csa-Chr7:1221683 Csa07g00139 Csa-Chr7:1235155 4.73E-173 tandem
Csa07g00139 Csa-Chr7:1235155 Csa07g00140 Csa-Chr7:1240827 1.85E-153 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g225 . . . . . . . . Cmo19g00774 . . . . . . . Cpe15g00616 Bhi05g01657 Tan02g0633 . . . . . . . . . . . . . . . . . Csa07g00139 . Cme01g01209 . . Bda15g01018 . . . . Bma08g00738 . . . Cma11g01356 Cma19g00762 . . . . . . . . . . . . . . . . . . Lsi11g01239 . Chy01g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00139 Csa_Chr07 FPKM 4.746835 0.0 5.785511 5.12347 3.793045 5.200661 5.282903 2.434928 4.904976 10.338699