Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00149 ATGGCTTTGTTTGTTTGCCTTCTCCTTTTCTTCCTCACCTCATTTGCTAATGCTTGTGATCGTTGTGTTCACCAATCCAAAGCTGCCTATTACTCAAACGATTCACCACTTTCATCTGGCGCTTGTGGTTATGGCTCTTTAGCTCTTGGCTTGTTTAACGGACACCTGGCTGCGGGCGTTCCTTCTCTTTACAAAGAAGGTGTTCGTTGTGGCGCATGCTATCAAATAAGGTGTAAGGACAAGAAGGTTTGCAGCAGAAGAGGGACCAAAGTCATATTGACTGATCAAAATGTACAAACCAACAGAACTGATTTTGTTTTGAGTAAGAAAGCTTTCTCTGCCATGGCTCAGAAGGGCCATGACAAGACTATTTTGAGACATGGGACTCTGGACATTGAATACAAAAGGATGCCTTGTGAATACAAAAAACAAAATTTGTCAGTAAGAATTGAAGAGTCAAGCAAAAAGCCTCATCACATGGCCCTCAAGTTCTTATTCCAAGGTGGGCAGACAGACATTGTTTTGGTTCATCTTCATCCGGTGAATGGGGGAAGAACGGCGTTCATGAGCAGAAGACATGGGACGGCGGTGTGGGAAATCGACATGATGCCGGAAAAGGCAGTGATGTTTCAAATAAGAGTGATTTCGGGGTTCGACGGGATGTGGATTAGGGCGGAGCGGGTGGTACCGGCAGACTGGAAGCCAGGGATGATCTACGACCTTGGAGTTCAGACAGATGCCATTGCTAAAGGACAAGAGAGTTGTAAACAATGCGATGAAGGGCATTGGTGA 792 45.45 MALFVCLLLFFLTSFANACDRCVHQSKAAYYSNDSPLSSGACGYGSLALGLFNGHLAAGVPSLYKEGVRCGACYQIRCKDKKVCSRRGTKVILTDQNVQTNRTDFVLSKKAFSAMAQKGHDKTILRHGTLDIEYKRMPCEYKKQNLSVRIEESSKKPHHMALKFLFQGGQTDIVLVHLHPVNGGRTAFMSRRHGTAVWEIDMMPEKAVMFQIRVISGFDGMWIRAERVVPADWKPGMIYDLGVQTDAIAKGQESCKQCDEGHW* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1287432 1290464 + CsaV3_7G001490.1 Csa07g00149 535712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00149 263 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Csa07g00149 263 PANTHER EXPANSIN-B3 5 260 - -
Csa07g00149 263 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Csa07g00149 263 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Csa07g00149 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Csa07g00149 263 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Csa07g00149 263 SUPERFAMILY Barwin-like endoglucanases 7 142 IPR036908 -
Csa07g00149 263 PANTHER EXPANSIN-LIKE A1-RELATED 5 260 - -
Csa07g00149 263 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Csa07g00149 263 Gene3D - 13 140 IPR036908 -
Csa07g00149 263 Pfam Lytic transglycolase 57 134 IPR009009 -
Csa07g00149 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
Csa07g00149 263 Gene3D - 141 245 IPR036749 -
Csa07g00149 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00149 Csa-Chr7:1287432 Csa07g00151 Csa-Chr7:1299135 1.25E-93 dispersed
Csa07g00149 Csa-Chr7:1287432 Csa07g00150 Csa-Chr7:1294094 5.49E-85 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00149 - - csv:101221029 548.125