Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00151 ATGGCTTGGTTCCTTAGCTTGTTCTTCTTCTTTCTTGTCTCTTTTACTAATGCTTGTGATCGTTGTATTCATCGGTCTAAAGCTACTCATTATTATGGAGATTCACCTACTTCATATGGAGGAGCATGTGGCTATGGAGACATGGCATTGGAATTTACCAATGGCTACTTTTCAGCTGCTGTCCCCTCTCTATACAAACAAGGAGCTGGTTGTGGAGCATGTTTTCAGGTAAGATGCAAAGACAAAAGACTATGCAATACAGCAGGGAGCAAAGTAGTATTGACAGATCAAAATTATGATAGCAGAGCAGATTTTGTTCTAAGTAGAAAAGCTTTTTCTGCTATGGCTTTAAAAGGAAAAGGTCAAGAGCTTTTGAATACTGGAATTGTGGATGTAGAATATAAGAGGATACCTTGTGGATACAAAAACAAAAATTTGGCTGTACGAGTTGAAGAATCAAGTTATAATCCAAATTATTTAGCTGTTAAACTTTTGTACCAAGGTGGCCAAACAGAGATTGTGGCTGTCGAGATAGCTGAGGTTGGTTCATATGAATGGGTGAGCTTAAGAAGAAACTATGGAGCAGTCTGGGATACAAGTAAAGTACCAAAAGGAGCATTACAAATGAGAATGGCATTTACTTCAGGATACGATGGAAAATGGGTTTGGGCAGAATATGTTCTTCCTGTCGATTGGAAAGTTGGAGCCATATACGATACTGGAGTTCAAATTTACGACATTGCTAAAGAAAGTTGCCCAACATCACAGTGTGGTGATAAACCATGGAAGTGA 792 38.76 MAWFLSLFFFFLVSFTNACDRCIHRSKATHYYGDSPTSYGGACGYGDMALEFTNGYFSAAVPSLYKQGAGCGACFQVRCKDKRLCNTAGSKVVLTDQNYDSRADFVLSRKAFSAMALKGKGQELLNTGIVDVEYKRIPCGYKNKNLAVRVEESSYNPNYLAVKLLYQGGQTEIVAVEIAEVGSYEWVSLRRNYGAVWDTSKVPKGALQMRMAFTSGYDGKWVWAEYVLPVDWKVGAIYDTGVQIYDIAKESCPTSQCGDKPWK* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1299135 1300788 + CsaV3_7G001510.1 Csa07g00151 535714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00151 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Csa07g00151 263 PANTHER EXPANSIN-B3 5 259 - -
Csa07g00151 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Csa07g00151 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Csa07g00151 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Csa07g00151 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Csa07g00151 263 Gene3D - 13 139 IPR036908 -
Csa07g00151 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Csa07g00151 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Csa07g00151 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Csa07g00151 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Csa07g00151 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Csa07g00151 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Csa07g00151 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Csa07g00151 263 PANTHER EXPANSIN-LIKE A1-RELATED 5 259 - -
Csa07g00151 263 Pfam Lytic transglycolase 60 134 IPR009009 -
Csa07g00151 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Csa07g00151 263 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Csa07g00151 263 Gene3D - 141 245 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00149 Csa-Chr7:1287432 Csa07g00151 Csa-Chr7:1299135 1.25E-93 dispersed
Csa07g00151 Csa-Chr7:1299135 Csa07g00153 Csa-Chr7:1312190 2.36E-97 dispersed
Csa07g00150 Csa-Chr7:1294094 Csa07g00151 Csa-Chr7:1299135 1.59E-115 tandem
Csa07g00151 Csa-Chr7:1299135 Csa07g00152 Csa-Chr7:1303954 4.50E-120 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00151 - - csv:101206821 547.74