Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00152 ATGTATTGGTTTCTCATTTTCCTCTTTTTGCTTGTCTCCTCGACCACGGCTTCTTTTCCGCCCTGTAATCGTTGTCTTCATCAATCCAAAGCTGCTTATTACTACGAAGATTCCCCTACTTCATATGGAGGTGCTTGTGGTTATGGAAATTTAGCATTGGAAATCTCTCAAGGTTATTTTGCAGCTGCAGTCCCTTCCCTTTATAAGGGAGGAGCAGGTTGTGGTGCTTGCTATCAGGTACGATGCAAGGACACGTATCTATGTAATACAGCAGGCACTAAAATAGTTTTGACAGATCAAAATAATGATAATAGAACGGATATTGTTCTTAGTAAGAAAGCTTTCTCTGCCATGGCTTTAAAAGGAAAAGCTCAACAACTCTTGAATACGGGACTCGTCGATATAGAATACAAGAGAATACCTTGTGAATACAAAAATAAAAATCTATTGGTACAAGTGGTTGAATGGAGCCACAAACCATATTATTTGGCGATCAAATTCTTATATCAAGGTGGTCAAACCGACATTCAAGCGGTCAACATAGCTCAGGTGGGTTTACCGAAATGGCGCCCTATGAAAAGAAACTATGGAGGTATTTGGGATATCAATGGTGTGCCAAAAGGAGGATTACAATTGAGAATGGTAGTAACTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTCTGTGCTCCCATCTGATTGGAAAAATGGAGAAATTTATGATACAGGAGTTCAAATTAATGATATTGCTTATGAATATTGCCCTCCTTGGCAATGTGGTGATGGAGGAGCATGTGGTTATGGGAACTTGGCATTGCAGTTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTATATAAACAAGGAGCTGGTTGTGGGGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACAAAGGTGGTATTAACAGATCAAAATAACGACAATGTAACAGATCTTGTTCTTAGTCCAAAGGCTTTCTTTACAATGGCTCTCAATGGTAAAGGTTCAGATCTTTTGAATCTTGGAGTGGTGGATGTTGAATATAAGAGGGTGCCATGTGAATATCCAAATAGGAATTTGTTGGTGAGAGTGGAAGAATCAAGTTACAACCCATTCAAATTGGCAATAAAATATTTGTACCAAGGTGGGCAAACAGAGATGGTTGCTGTTGATATAGCTCAGGTTGGGACATCAGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAACAGACAATGTACCTGAAGGTGCATTACAGTTGAGGATGGTTGTGACTTCTGGATATGATGGAAAATGGGTTTGGGCAAAGTCTGTACTTCCTGCTACCTGGAGAGCTGGGGGCATTTATGATACTGGAGTTCAAATCAACGACATTGCTAAAGAGAGTTGCCCTCCATGGCAATGTGGTGATAACCCGTGGAAATGA 1464 40.44 MYWFLIFLFLLVSSTTASFPPCNRCLHQSKAAYYYEDSPTSYGGACGYGNLALEISQGYFAAAVPSLYKGGAGCGACYQVRCKDTYLCNTAGTKIVLTDQNNDNRTDIVLSKKAFSAMALKGKAQQLLNTGLVDIEYKRIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRPMKRNYGGIWDINGVPKGGLQLRMVVTSRYDNGKWIWAGSVLPSDWKNGEIYDTGVQINDIAYEYCPPWQCGDGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGVVDVEYKRVPCEYPNRNLLVRVEESSYNPFKLAIKYLYQGGQTEMVAVDIAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPATWRAGGIYDTGVQINDIAKESCPPWQCGDNPWK* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1303954 1309542 + CsaV3_7G001520.1 Csa07g00152 535715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00152 487 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 244 IPR007117 -
Csa07g00152 487 SMART dpbb_1 282 358 IPR007112 -
Csa07g00152 487 SMART dpbb_1 61 137 IPR007112 -
Csa07g00152 487 Pfam Expansin C-terminal domain 372 453 IPR007117 -
Csa07g00152 487 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Csa07g00152 487 Gene3D - 143 240 IPR036749 -
Csa07g00152 487 Gene3D - 365 469 IPR036749 -
Csa07g00152 487 SUPERFAMILY Barwin-like endoglucanases 16 146 IPR036908 -
Csa07g00152 487 SUPERFAMILY PHL pollen allergen 368 463 IPR036749 -
Csa07g00152 487 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Csa07g00152 487 PANTHER EXPANSIN-B3 6 261 - -
Csa07g00152 487 PANTHER EXPANSIN-B3 263 482 - -
Csa07g00152 487 SUPERFAMILY Barwin-like endoglucanases 259 367 IPR036908 -
Csa07g00152 487 Pfam Lytic transglycolase 283 358 IPR009009 -
Csa07g00152 487 Pfam Lytic transglycolase 62 137 IPR009009 -
Csa07g00152 487 Gene3D - 15 142 IPR036908 -
Csa07g00152 487 Gene3D - 241 364 IPR036908 -
Csa07g00152 487 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 382 464 IPR007117 -
Csa07g00152 487 PANTHER EXPANSIN-LIKE A1-RELATED 6 261 - -
Csa07g00152 487 PANTHER EXPANSIN-LIKE A1-RELATED 263 482 - -
Csa07g00152 487 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Csa07g00152 487 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Csa07g00152 487 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Csa07g00152 487 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Csa07g00152 487 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Csa07g00152 487 SUPERFAMILY PHL pollen allergen 154 243 IPR036749 -
Csa07g00152 487 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 264 368 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03272 Csa-Chr1:29035110 Csa07g00152 Csa-Chr7:1303954 3.56E-92 dispersed
Csa03g04675 Csa-Chr3:40664396 Csa07g00152 Csa-Chr7:1303954 8.20E-48 dispersed
Csa07g00150 Csa-Chr7:1294094 Csa07g00152 Csa-Chr7:1303954 1.58E-97 dispersed
Csa07g00152 Csa-Chr7:1303954 Csa07g00154 Csa-Chr7:1321911 5.40E-101 dispersed
Csa07g00151 Csa-Chr7:1299135 Csa07g00152 Csa-Chr7:1303954 4.50E-120 tandem
Csa07g00152 Csa-Chr7:1303954 Csa07g00153 Csa-Chr7:1312190 9.95E-97 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00152 - - csv:101209383 560.451