Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00153 ATGAATGTAATTGAAATGATGAATTTTATCATGTGTATGATTGAGTTATATGAAAATATTATTATAGATGGAGGTGCATGTGGGTATGGAAATTTGGCCTTGGAAATGTCTAAAGGTTATTTTGCAGCTGCTGTCCCTTCTATCTATAGAGAAGGAATGGGTTGTGGTGCTTGCTACCAGATAAGATGCAAGAATGCAACATTATGTAACACAGTTGGGACCAAAGTAGTTTTGACAGATCAAAATTCTGATAACAGAACAGATTTTGTTGTTAGTAGAAAAGCTTTTTCAGCTATGGCTTTAGATGGCAAAGGCCAACAACTTTTGAAAACTGGAATTGTTGATATTGAATACAAAAGGATACCTTGTGAATACAATAAAAACTTATTAATACAAGTAGTAGAATGGAGCCACAAGCCATATTATTTGGCTATTAAATTCCTTTACCAAGGAGGCCAAACAGACATAACCGCAGTCGATCTAGCAACTCAGGATGGTTCTGGAGGGTGGCAATACATGAGAAGAAACTATGGAGCTATTTGGGATACAAATAAAGTTCCAGAAGGAGCGATAAAGCTAGTGGTGATTGTAGTTTCAGGTTACAAAAATGGAAGAGGGATAATGATAAATTATGCACTTCCTGCTGATTGGAAAACTGGAGAGATTTATGATACTGGAATTCAAATCAAAGATATCGCTACTGAAGCTTGCAATCCTTGGAGATGTGATGGAGGAGCATGTGGTTATGGCAACGTGGCCTTGCAGTTCTCTAATGGCTTCTTTGCAGCTGCTGTCCCTTCCCTTTATAGACAAGGAGTTGGTTGTGGTGCTTGCTATCAGGTGAGATGCAAAAACAGAAGGCTTTGTAACACCATAGGGACTAAAGTGGTGTTAACGGATCAAAATAATGATAATGTGACAGATCTTGTTCTTAGTAAAAGAGCTTTCTTTACAATGGCTCTAAATGGCAAAGGCGCAGACCTCTTGAATCTTGGAGTTGTTGATGTTGAATACAAGAGGGTGGCTTGTGAATACAAACATAAGAATCTGTTAGTGCAAGTGGAAGAATCAAGCTACAATCCATTTTACTTGGCAATTAAATTCTTGTACCAAGGTGGCCAAACAGACATGGTAGCTGTGGATATAGCTCAAGTAGGTACCTCAGAGTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAATTAACAACATACCTGAAGGCTCATTACAATTGAGAATGGTTGTGACTTCTGGATATGATGGAAAATGGGTTTGGGCAAAGTCTGTACTTCCTGCTGATTGGAAAAGTGGAGCCATTTACGATACTGGAGTTCAGATCAACGACATTGCTAAAGAGAGTTGTCCTCCATGGCAATGTGGTGATAAACCATGGAAATGA 1404 38.82 MNVIEMMNFIMCMIELYENIIIDGGACGYGNLALEMSKGYFAAAVPSIYREGMGCGACYQIRCKNATLCNTVGTKVVLTDQNSDNRTDFVVSRKAFSAMALDGKGQQLLKTGIVDIEYKRIPCEYNKNLLIQVVEWSHKPYYLAIKFLYQGGQTDITAVDLATQDGSGGWQYMRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDIATEACNPWRCDGGACGYGNVALQFSNGFFAAAVPSLYRQGVGCGACYQVRCKNRRLCNTIGTKVVLTDQNNDNVTDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKRVACEYKHKNLLVQVEESSYNPFYLAIKFLYQGGQTDMVAVDIAQVGTSEWSHMKRSYGAVWEINNIPEGSLQLRMVVTSGYDGKWVWAKSVLPADWKSGAIYDTGVQINDIAKESCPPWQCGDKPWK* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1312190 1318022 + CsaV3_7G001530.1 Csa07g00153 535716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00153 467 PANTHER EXPANSIN-LIKE A1-RELATED 22 239 - -
Csa07g00153 467 SUPERFAMILY Barwin-like endoglucanases 20 127 IPR036908 -
Csa07g00153 467 SUPERFAMILY Barwin-like endoglucanases 237 347 IPR036908 -
Csa07g00153 467 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 24 128 IPR007112 -
Csa07g00153 467 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Csa07g00153 467 PRINTS Expansin/Lol pI family signature 23 41 IPR007118 GO:0005576
Csa07g00153 467 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Csa07g00153 467 PRINTS Expansin/Lol pI family signature 170 184 IPR007118 GO:0005576
Csa07g00153 467 PRINTS Expansin/Lol pI family signature 111 127 IPR007118 GO:0005576
Csa07g00153 467 Gene3D - 15 123 IPR036908 -
Csa07g00153 467 Gene3D - 124 221 IPR036749 -
Csa07g00153 467 PANTHER EXPANSIN-LIKE A1-RELATED 243 462 - -
Csa07g00153 467 SUPERFAMILY PHL pollen allergen 348 443 IPR036749 -
Csa07g00153 467 SMART dpbb_1 42 118 IPR007112 -
Csa07g00153 467 SMART dpbb_1 262 338 IPR007112 -
Csa07g00153 467 Pfam Expansin C-terminal domain 137 200 IPR007117 -
Csa07g00153 467 Pfam Expansin C-terminal domain 352 433 IPR007117 -
Csa07g00153 467 PANTHER EXPANSIN-B3 243 462 - -
Csa07g00153 467 PANTHER EXPANSIN-B3 22 239 - -
Csa07g00153 467 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 244 348 IPR007112 -
Csa07g00153 467 Gene3D - 345 449 IPR036749 -
Csa07g00153 467 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 141 225 IPR007117 -
Csa07g00153 467 SUPERFAMILY PHL pollen allergen 134 224 IPR036749 -
Csa07g00153 467 Pfam Lytic transglycolase 263 338 IPR009009 -
Csa07g00153 467 Pfam Lytic transglycolase 43 118 IPR009009 -
Csa07g00153 467 Gene3D - 222 341 IPR036908 -
Csa07g00153 467 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 362 444 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00151 Csa-Chr7:1299135 Csa07g00153 Csa-Chr7:1312190 2.36E-97 dispersed
Csa07g00152 Csa-Chr7:1303954 Csa07g00153 Csa-Chr7:1312190 9.95E-97 tandem
Csa07g00153 Csa-Chr7:1312190 Csa07g00154 Csa-Chr7:1321911 2.21E-81 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00153 - - csv:101209873 471.47