Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00154 ATGCCTTTCTTCCTCCTCCTTCTCTTCCTCTCCCTTTTCTCCTCAGCCACTGCTTGTGATCGTTGTATTCATCAAGCCAAAGCTGCCTTCTACCAAGACGAAGCCGCCGGTCTATATAGAGGCGCTTGTGGCTATGGCGATCTTACATTACAGCTCTCAAATGGCTACTTCTCCGCCATTATGCCTCCTCTTTACAAGTATGGCGCTGGCTGTGGCGCCTGTTTTCAAGTAAGGTGCAAGAACGAGAAGATTTGTAGTAAAGAAGGGACGAAAATCATTGTAACAGATCGAAACGATAATACTTATACAGGATTGGTTCTTAGTCAGAAAGCTTTTGGTGAAATGGCTATGAGTGGAAAAGATGGATTGCTTTTGAGTTATGGAGTTGTGGATGTTGAATTCAAGAGGATTCCTTGTGAATACGATAACAAAAACTTGATGGTTAGAGTAGAAGAATGGAGTCAATATCCCAATTACTTAGCTATTAAATTGCTTAACCAAGGTGGCCAAACCGAAATAGTAGCCATCGATATAGCTCAGGTAGGTTACTCGAATTGGGATTACATGGGTAGGAACTACGGCGCTGTGTGGGAGACTAAAAAACCAGCCCCAAAAGGACCATTGCAACTACGGTTCGTGGTTACTTCTGGATATGATGGTAAATACATTTGGGCTAAATACGTACTCCCTGCTGACTGGAGACCTGGACTAGTTTACGATACTGGAGTTCAAATCTACGACATTGCTAAAGAAGGTTGTCCAACAGAACAATGTGGCGATGGGCAATGGAAACGACGATAA 801 43.32 MPFFLLLLFLSLFSSATACDRCIHQAKAAFYQDEAAGLYRGACGYGDLTLQLSNGYFSAIMPPLYKYGAGCGACFQVRCKNEKICSKEGTKIIVTDRNDNTYTGLVLSQKAFGEMAMSGKDGLLLSYGVVDVEFKRIPCEYDNKNLMVRVEEWSQYPNYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPAPKGPLQLRFVVTSGYDGKYIWAKYVLPADWRPGLVYDTGVQIYDIAKEGCPTEQCGDGQWKRR* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1321911 1323911 + CsaV3_7G001540.1 Csa07g00154 535717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00154 266 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Csa07g00154 266 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Csa07g00154 266 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Csa07g00154 266 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Csa07g00154 266 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Csa07g00154 266 PANTHER EXPANSIN-B3 5 260 - -
Csa07g00154 266 Gene3D - 11 140 IPR036908 -
Csa07g00154 266 PRINTS Major pollen allergen Lol pI signature 59 70 IPR005795 GO:0005576|GO:0019953
Csa07g00154 266 PRINTS Major pollen allergen Lol pI signature 79 89 IPR005795 GO:0005576|GO:0019953
Csa07g00154 266 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Csa07g00154 266 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Csa07g00154 266 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Csa07g00154 266 PRINTS Major pollen allergen Lol pI signature 217 234 IPR005795 GO:0005576|GO:0019953
Csa07g00154 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Csa07g00154 266 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Csa07g00154 266 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Csa07g00154 266 Pfam Lytic transglycolase 60 133 IPR009009 -
Csa07g00154 266 PANTHER EXPANSIN-LIKE A1-RELATED 5 260 - -
Csa07g00154 266 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Csa07g00154 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Csa07g00154 266 Gene3D - 141 246 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00152 Csa-Chr7:1303954 Csa07g00154 Csa-Chr7:1321911 5.40E-101 dispersed
Csa07g00153 Csa-Chr7:1312190 Csa07g00154 Csa-Chr7:1321911 2.21E-81 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00154 - - csv:101217243 548.125