Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00177 ATGACCTACACACCTCCAACATGGGCGACATTAGCAGCTGCCGCACTTGTTATTCTGACTCTTGTCCTTTCACTGTATCTATTGTTCGAGCACCTCTCTGCATATAAGAATCCAGAGGAGCAAAAGTTTTTGATTGGTGTTATCCTGATGGTCCCGACTTATGGTGTTGAATCATTTGTATCATTGGTGTACCCATCAATAAGTGTTTATCTTGAGATACTACGCGATTGCTATGAATCCTTCGCAATGTACTGCTTTGGACGATACCTGGTTGCTTGCTTGGGTGGAGAAGAAGGAACTATTGCATTTTTAGAGAGAGAAGGACGTTCAAATACTAAGACACCTTTATTAGAACATAGCTCAGAAAAGGGAACCATCAAACATGTTTTCCCTATGAACCTTTTCTTAAAGCCGTGGAAAATTGGTGGATGGGTTTACCATGTCATCAAAATTGGAATCGTCCAATATATGATGATAAAGTCCCTCACTTCTATTTTAGCTGTAGTTCTTGAGAACTTTGGTGTTTATTGTGAAGGAGACTTTAATTTCAAATGCGGGTATCCTTATATGGCAGTGGTTTTAAATTTCAGTCAAACATGGGCACTGTACTGCCTGATTCAGTTCTATACAGTTACAAAGGATGAATTGGTACATATAAAGCCATTGGCCAAATTTTTGATGTTTAAATCTATAGTATTTTTGACTTGGTGGCAAGGTGTTGGAATTGCTCTCCTATCTGCCTTCGATTTGTTCAGGAGTCCTGTAGCCCAAGGGTTACAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGTATAGAGAAAACTGAATTTTAA 834 38.73 MTYTPPTWATLAAAALVILTLVLSLYLLFEHLSAYKNPEEQKFLIGVILMVPTYGVESFVSLVYPSISVYLEILRDCYESFAMYCFGRYLVACLGGEEGTIAFLEREGRSNTKTPLLEHSSEKGTIKHVFPMNLFLKPWKIGGWVYHVIKIGIVQYMMIKSLTSILAVVLENFGVYCEGDFNFKCGYPYMAVVLNFSQTWALYCLIQFYTVTKDELVHIKPLAKFLMFKSIVFLTWWQGVGIALLSAFDLFRSPVAQGLQFKSSVQDFIICIEKTEF* 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1466029 1472687 - CsaV3_7G001770.1 Csa07g00177 535740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00177 277 Pfam Organic solute transporter Ostalpha 11 273 IPR005178 -
Csa07g00177 277 PANTHER PROTEIN LAZ1 2 273 IPR031171 GO:0009626
Csa07g00177 277 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 2 273 IPR005178 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00177 - - - csv:101217133 519.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01905 Csa-Chr6:17173548 Csa07g00177 Csa-Chr7:1466029 1.02E-100 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g279 . . . . . Bpe12g00146 . . Cmo19g00812 Cmo11g01781 . . . . . . Cpe15g00635 Bhi05g01598 . . . . . . Cla02g00356 Cam02g0364 Cec02g0365 Cco02g0372 Clacu02g0356 Cmu02g0353 Cre02g0683 . . . . . Csa07g00177 . Cme01g01155 . Blo13g00478 . . . . . Bma08g00721 . . . Cma11g01338 . Car11g01409 Car19g00608 . . . . . . . . . . . . . . . . Lsi11g01278 . Chy01g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007981 0 8 1 1 1 1 2 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 0 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00177 Csa_Chr07 FPKM 24.606022 26.200069 18.835037 18.34494 21.739197 18.347128 19.139393 19.798079 19.718565 21.715542