Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00180 ATGGGTGCCGACGGTGATTCCAGCGAGCACCGGGTTGATGGCGATGCTGAAGAAGGAGGAGTTAGTGTTGCAGTTAACATTCGATGTTCTAATGGGTCGAAATTTTCTGTCACCACGAGTCTGGACTCTACGGTTGCGACATTCAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAGCAGCGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAGACCTTAGTTAGTTATGGTTTACAGGCAGATCACACTATTCACATGGTTCGTGGTTTTGCCCAAGCTTCATCAACACCTTCTGCGCCTGCTTCTAATGTTAATACTAGAAGTTCTGACACCGCTCCTGGAGTCACAAGAGGTGTTGGTTCTAATGAGAGTGGTGCTTTTGGAAATGGTGGCCTTGGTGCGTCATTATTTCCTGGACTGGGTTTCAATCCTCTTGGTGGAGGTGGAGCTGGACTTCCTGAGTTTGAGCAAGTGCAACAACAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATACAGAATTTGATGAATAACCCTGACTTGATGCGAACCTTAATTATGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATACTAAATGACCCTGGTATCCTTCGACAGACATTAGAGGCTGCAAGGAATCCGGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCAATGAGTAACATTGAATCTTCTCCCGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTCCAGGAGCCATTTCTAAATGCAACCACTATGGCTGGAAATGCTGGAAATGATTCGAGTTCAAACCCATTTGCTGCTCTCTTGGCAAACCAAGGAGGTGCACAAGCGAGGAATGAGTCCAATAATTCAACTACAGGATCAGAAACAACAGGAAATGCTGCTCCGAATACAAATCCACTTCCTAATCCCTGGGGTAATAATGCTAGTGGAGGAACTCAGACTACAACCACACAGCCTACTCCAGCTGGTGATACAAGGGCTCCTGGTATTGGGGGTTTAGGAGGGGCTGGTCGTACAAATATGGATCGTTTTGCTGGTGCTGTGCCAGACCCAGCTCAGTTGAATCAGTTTCTGCAAAACCCAGCTATTTCACAGATGATGCAGAGTCTGCTCTCCAATCCTCAGTATATGAATCAAATCCTCAATCTCAATCCACAGCTACGAAGTATGGTTGATATGAATCCTCAATTAAGAGAGATGATGCAAAATCCAGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATGCAGCAAATGCTATCAATTCAGCAGTCCCTCCTCTCTACCTTAAATCGACAGCCATCGTCTCAAGATGCTGCTCAAACAGGTGCTGCAGCAGGTGTTCCTAACACTGCTGGATTAGAGATGTTAATGAACCTGTTTGGTGGACTCGGTGCTGGCGGTTTGGCTGCCCCGCACAATCCAAATGTTCCCCCAGAAGAACTATACGCAACTCAACTTTCACAGCTCCAAGAGATGGGTTTCTTTGACACTCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAACGTCCATGCTGCTGTGGAGCGACTGCTGGGAAATCTCGGACAGTAA 1656 46.01 MGADGDSSEHRVDGDAEEGGVSVAVNIRCSNGSKFSVTTSLDSTVATFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPSAPASNVNTRSSDTAPGVTRGVGSNESGAFGNGGLGASLFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDSSSNPFAALLANQGGAQARNESNNSTTGSETTGNAAPNTNPLPNPWGNNASGGTQTTTTQPTPAGDTRAPGIGGLGGAGRTNMDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQSLLSTLNRQPSSQDAAQTGAAAGVPNTAGLEMLMNLFGGLGAGGLAAPHNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ* 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1474267 1479028 - CsaV3_7G001800.1 Csa07g00180 535743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00180 551 MobiDBLite consensus disorder prediction 297 372 - -
Csa07g00180 551 SMART ubq_7 23 94 IPR000626 GO:0005515
Csa07g00180 551 SUPERFAMILY Ubiquitin-like 22 107 IPR029071 -
Csa07g00180 551 PANTHER UBIQUILIN 1 551 - -
Csa07g00180 551 Gene3D - 195 253 - -
Csa07g00180 551 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 504 548 IPR015940 -
Csa07g00180 551 SUPERFAMILY UBA-like 505 547 IPR009060 GO:0005515
Csa07g00180 551 MobiDBLite consensus disorder prediction 297 349 - -
Csa07g00180 551 Gene3D - 10 107 - -
Csa07g00180 551 ProSiteProfiles Ubiquitin domain profile. 23 92 IPR000626 GO:0005515
Csa07g00180 551 PRINTS Ubiquitin signature 54 74 IPR019956 -
Csa07g00180 551 PRINTS Ubiquitin signature 75 96 IPR019956 -
Csa07g00180 551 CDD UBA_PLICs 509 547 - -
Csa07g00180 551 Pfam Ubiquitin family 25 92 IPR000626 GO:0005515
Csa07g00180 551 SMART CBM 367 406 IPR006636 -
Csa07g00180 551 SMART CBM 200 239 IPR006636 -
Csa07g00180 551 SMART CBM 148 187 IPR006636 -
Csa07g00180 551 SMART CBM 410 445 IPR006636 -
Csa07g00180 551 CDD Ubl_Dsk2p_like 23 95 - -
Csa07g00180 551 Pfam UBA/TS-N domain 509 545 IPR015940 -
Csa07g00180 551 Gene3D - 491 550 - -
Csa07g00180 551 MobiDBLite consensus disorder prediction 99 128 - -
Csa07g00180 551 MobiDBLite consensus disorder prediction 99 123 - -
Csa07g00180 551 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 551 - -
Csa07g00180 551 SMART uba_6 509 547 IPR015940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00180 K04523 UBQLN, DSK2; ubiquilin - csv:101210644 964.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00034 Csa-Chr3:383408 Csa07g00180 Csa-Chr7:1474267 0 dispersed
Csa04g02684 Csa-Chr4:26044321 Csa07g00180 Csa-Chr7:1474267 5.75E-10 dispersed
Csa07g00180 Csa-Chr7:1474267 Csa03g00539 Csa-Chr3:4513090 5.12E-08 dispersed
Csa07g00180 Csa-Chr7:1474267 Csa06g03538 Csa-Chr6:28792634 8.75E-07 transposed
Csa07g00180 Csa-Chr7:1474267 Csa01g01103 Csa-Chr1:6843101 8.75E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00180 Csa_Chr07 FPKM 16.391666 16.827177 13.929739 16.040316 25.818199 25.115456 23.74135 19.284735 18.153091 17.096687