Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g00181 | ATGAATCCGCATTTCAACTCCCTCTCCATTACCACTACTACCAGCTCTCCTATCGACCTCACCATTATTCCTTTCCAACCTTCTTCTACCTCCTCTTTCGACGACTCATCCTTACCCAACCCCCGTCGTCCTCGCAAGAAACGCTCAAGAACCCAAACCCACGACCACCACCACTACTCCACCCTTCTCACCACCACTTCTAAATCTAAGTACACCAAGAAACCCGATCCTAATGCACCCAAGATCACTCGTCCATGTACTGAGTGCGGGAAGAAGTTTTGGTCCGATAAAGCGCTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGTGGGATTATTCCCCCTGTTAATTACCGTCGTCCCGTTTCGGCTTCTCCTAATTTTAGCCCTAATGTCGAACACTCTTCTAATTCCTTTACTGAAGAAGATCAAGACATTGCTAATTCTTTATTAATGCTTGCCAATGGCCCTAATTTCTCCATTTCTAGGGTTTCTGACTCTCGGTTTGAATGTTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCACTTGGGGGGCATAGAGCAAGTCATAAGAATGTAAGAGGCTGTTTTGCTATGGCAAGGAGCGATGAAGAAGAAACAGAAGATGAAATTACTCTCTTTGGGGATTTTGGACGCCATGAAAGGAGTTTTAATCTGGAGAATGAAATGTCGATGATGATTTTAGGGACAGAAAACCATGAGAAGAGATTCCAATGGGAGAATAATGCAGCTACTGATCAGGAGAGATTTGTTAATTTGGATTTAAACTTGCCTGCTCCTCTTGAAGATGATTCCTCTTCTTCATATTCTTCAAGCCTCACTCTGGATCTCAGGTTGGGTCTTTGA | 876 | 44.18 | MNPHFNSLSITTTTSSPIDLTIIPFQPSSTSSFDDSSLPNPRRPRKKRSRTQTHDHHHYSTLLTTTSKSKYTKKPDPNAPKITRPCTECGKKFWSDKALFGHMRCHPERQWRGIIPPVNYRRPVSASPNFSPNVEHSSNSFTEEDQDIANSLLMLANGPNFSISRVSDSRFECSSCKKVFGSHQALGGHRASHKNVRGCFAMARSDEEETEDEITLFGDFGRHERSFNLENEMSMMILGTENHEKRFQWENNAATDQERFVNLDLNLPAPLEDDSSSSYSSSLTLDLRLGL* | 292 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1483919 | 1484794 | + | CsaV3_7G001810.1 | Csa07g00181 | 535744 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g00181 | 291 | MobiDBLite | consensus disorder prediction | 58 | 73 | - | - | |
Csa07g00181 | 291 | SMART | c2h2final6 | 84 | 106 | IPR013087 | - | |
Csa07g00181 | 291 | SMART | c2h2final6 | 171 | 193 | IPR013087 | - | |
Csa07g00181 | 291 | SUPERFAMILY | beta-beta-alpha zinc fingers | 85 | 193 | IPR036236 | - | |
Csa07g00181 | 291 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 15 | 291 | - | - | |
Csa07g00181 | 291 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 173 | 193 | IPR013087 | - | |
Csa07g00181 | 291 | Pfam | C2H2-type zinc finger | 85 | 108 | - | - | |
Csa07g00181 | 291 | Pfam | C2H2-type zinc finger | 170 | 194 | - | - | |
Csa07g00181 | 291 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 84 | 111 | IPR013087 | - | |
Csa07g00181 | 291 | MobiDBLite | consensus disorder prediction | 27 | 81 | - | - | |
Csa07g00181 | 291 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 171 | 198 | IPR013087 | - | |
Csa07g00181 | 291 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 15 | 291 | - | - | |
Csa07g00181 | 291 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 86 | 106 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00377 | Csa-Chr3:3181546 | Csa07g00181 | Csa-Chr7:1483919 | 4.23E-13 | dispersed | |
Csa06g03396 | Csa-Chr6:28154793 | Csa07g00181 | Csa-Chr7:1483919 | 2.41E-08 | dispersed | |
Csa07g00181 | Csa-Chr7:1483919 | Csa03g00738 | Csa-Chr3:6579819 | 5.79E-12 | dispersed | |
Csa06g01015 | Csa-Chr6:8262202 | Csa07g00181 | Csa-Chr7:1483919 | 6.42E-20 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32243 | PF13912 | zf-C2H2_6 | 7.20E-10 | CL0361 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g00181 | - | - | csv:105436224 | 536.184 |