Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00181 ATGAATCCGCATTTCAACTCCCTCTCCATTACCACTACTACCAGCTCTCCTATCGACCTCACCATTATTCCTTTCCAACCTTCTTCTACCTCCTCTTTCGACGACTCATCCTTACCCAACCCCCGTCGTCCTCGCAAGAAACGCTCAAGAACCCAAACCCACGACCACCACCACTACTCCACCCTTCTCACCACCACTTCTAAATCTAAGTACACCAAGAAACCCGATCCTAATGCACCCAAGATCACTCGTCCATGTACTGAGTGCGGGAAGAAGTTTTGGTCCGATAAAGCGCTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGTGGGATTATTCCCCCTGTTAATTACCGTCGTCCCGTTTCGGCTTCTCCTAATTTTAGCCCTAATGTCGAACACTCTTCTAATTCCTTTACTGAAGAAGATCAAGACATTGCTAATTCTTTATTAATGCTTGCCAATGGCCCTAATTTCTCCATTTCTAGGGTTTCTGACTCTCGGTTTGAATGTTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCACTTGGGGGGCATAGAGCAAGTCATAAGAATGTAAGAGGCTGTTTTGCTATGGCAAGGAGCGATGAAGAAGAAACAGAAGATGAAATTACTCTCTTTGGGGATTTTGGACGCCATGAAAGGAGTTTTAATCTGGAGAATGAAATGTCGATGATGATTTTAGGGACAGAAAACCATGAGAAGAGATTCCAATGGGAGAATAATGCAGCTACTGATCAGGAGAGATTTGTTAATTTGGATTTAAACTTGCCTGCTCCTCTTGAAGATGATTCCTCTTCTTCATATTCTTCAAGCCTCACTCTGGATCTCAGGTTGGGTCTTTGA 876 44.18 MNPHFNSLSITTTTSSPIDLTIIPFQPSSTSSFDDSSLPNPRRPRKKRSRTQTHDHHHYSTLLTTTSKSKYTKKPDPNAPKITRPCTECGKKFWSDKALFGHMRCHPERQWRGIIPPVNYRRPVSASPNFSPNVEHSSNSFTEEDQDIANSLLMLANGPNFSISRVSDSRFECSSCKKVFGSHQALGGHRASHKNVRGCFAMARSDEEETEDEITLFGDFGRHERSFNLENEMSMMILGTENHEKRFQWENNAATDQERFVNLDLNLPAPLEDDSSSSYSSSLTLDLRLGL* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1483919 1484794 + CsaV3_7G001810.1 Csa07g00181 535744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00181 291 MobiDBLite consensus disorder prediction 58 73 - -
Csa07g00181 291 SMART c2h2final6 84 106 IPR013087 -
Csa07g00181 291 SMART c2h2final6 171 193 IPR013087 -
Csa07g00181 291 SUPERFAMILY beta-beta-alpha zinc fingers 85 193 IPR036236 -
Csa07g00181 291 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 15 291 - -
Csa07g00181 291 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Csa07g00181 291 Pfam C2H2-type zinc finger 85 108 - -
Csa07g00181 291 Pfam C2H2-type zinc finger 170 194 - -
Csa07g00181 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Csa07g00181 291 MobiDBLite consensus disorder prediction 27 81 - -
Csa07g00181 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Csa07g00181 291 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 15 291 - -
Csa07g00181 291 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00377 Csa-Chr3:3181546 Csa07g00181 Csa-Chr7:1483919 4.23E-13 dispersed
Csa06g03396 Csa-Chr6:28154793 Csa07g00181 Csa-Chr7:1483919 2.41E-08 dispersed
Csa07g00181 Csa-Chr7:1483919 Csa03g00738 Csa-Chr3:6579819 5.79E-12 dispersed
Csa06g01015 Csa-Chr6:8262202 Csa07g00181 Csa-Chr7:1483919 6.42E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32243 PF13912 zf-C2H2_6 7.20E-10 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00181 - - csv:105436224 536.184