Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa07g00182 | ATGCCAATGGACCGAGCAGCCAAGCTCTCGAAAGCCATTTACCTTAATTCTAACAATCCTAACCTAGCATGGCTTCTCTTCAAGCGAATCCTCTCTTCCCCGATCCCCGCTTCTTCTTCCTTCTTCAAGCCCTCTCTTCAATCTGTACCCGCTATTGCCCGTATCCTCATCACTGCAAAAATGCACCCACAGATCGATCACCTTCACCAACTCCTCTTGTCGCAGCACCGGGACTTTGCTCATCCATCTGGATTTTCACTTGTTCGAACGTTGGCTGATTTGGGTCTCCTTGAAAACGCCATTTCTCAGTTTCGATCGCTTCGAGACAGGTTTCCTCATGACCCTCCTCCTATTTCTTTCTATAATCTTCTGTTTCGGTGTTCTTTGAAGGAAAGCCGTGTTGATTGTGTGATTTGGCTATATAAGGATATGGCTGTTGCGAGAGTTAAACCACAAACTTATACTTTTAATTTGCTGATAAGTGCGCTTTGCGAAATGGGGTACTTGGAGAATGCACGAGAAGTGTTTGATAAAATGTCTGAAAAAGGGTGTAAGCCTAATGAGTTTAGTCTTGGGATTTTGGTTCGTGGGTATTGTAGAGCTGGTCTCCATTCTCATGGGATTGATCTTTTGGACGAGATGAGGAGCTCTGGTGCTTTGCCTAATAGGGTTGCGTACAATACTGTGATATCTTCTCTCTGTGGAGAAGGTCAGACTGTGGAGGCTGAGAAATTGGTGGAAAAGATGAGAGAGGTTGGTCTTTCTCCAGATATTGTAACTTTCAATTGTAGAATTGCTGCCCTCTGTAAATCTGGGCAAATTTTAGAAGCTTCCAGAATTTTTAGAGATATGCAAATAGATGAAGAGATGGGGTTACCGAAGCCTAATACCGTAACATATAATTTAATGCTAGAAGGATTTTGTAGTGAAGGAATGTTCGAGGAAGCTAGGGCTATTTTTGATTCTATGAAAAATTCTGAAACTCTGAGCTTGAGAAGCTATAACATATGGATGTTAGGATTGGTTAGAAGTGGAAAGCTCCTTGAAGCTCATTTAATTCTTAATGAGATGGCAGAAAAGAATATAAAACCCAATCTCTACTCCTACAACATTTTGGTACATGGACTTTGTAAATATGGAATGTTTTCTGATGCAAGATCTATATTAGGCCTAATGAGAGAGAGTGGTGTTGCTCCAGATACTGTAACTTATAGTACCTTACTGCATGGATACTGTAGGAGAGGAAAGATACTTGAAGCCAACTATGTTCTTCGTGAAATGATACAGGTTGGTTGCTTTCCCAATATGTATACTTGTAACATCCTACTTCACAGCCTGTGGAAAGAGGGGAGGGCATCAGAGGCGGAAGACTTGCTGCAAATGATGAATGAAAGAGGTTATGGGTTGGATAATGTAACTTGTAATACAATGATTAATGGCCTCTGTAAAGCTGGGAATCTGGACAAAGCTATTGAAATAGTGAGTGGCATGTGGACACGTGGAAGTGCTTCTCTTGGTAATCTAGGGAACTCTTTTATTGATCTTTTTGATATTCGTAATAATGGGAAGAAGTGTTTGCCAGACTCGATCACATATGCAACCATAATAGGTGGATTATGTAAGGTAGGGCGGGTTGATGAAGCAAAAAAGAAGCTTCTGGAGATGATTGGGAAAAAGTTATCTCCTGATTCACTAATATTTGATACTTTCATATATAATTACTGTAAACAAGGTAAGTTATCGTCTGCTTTTAGAGTTCTCAAAGAAATGGAGAAAAAAGGTTGCAACAAGAGCCTTCGAACATATAATTCACTGATCCAGGGTTTAGGTAGTGAAAATCAAATATTTGAAATATATGGATTGATGGATGAGATGAAAGAAAGAGGAATTTTTCCTAACGTGTACACTTATAATAACATTATTAGCTGCCTATCTGAAGGTGGGAAACTCAAAGATGCCACTTGTCTTTTGGATGAAATGCTGCAGAAGGGGATATCTCCTAATATATATACTTTTAGGATTCTAATTGGAGCTTTTTTCAAGGCTTGCGACTTTGGAGCCGCCCAAGAATTATTTGAGATAGCTTTAAGCCTATGTGGCCATAAGGAATCCTTGTATAGTTTTATGTTCAATGAGCTACTAGCTGGAGGTGAAACATTGAAGGCTAAAGAGCTTTTTGAAGCTGCATTGGATAGATCTTTAGCCTTGAAAAATTTTCTTTATAGGGACCTGATTGAAAAACTTTGCAAGGACGGAAAGTTAGATGATGCTAGTTTCATTCTTCATAAGATGATGGATAAACAGTATAGTTTTGACCCTGCATCATTCATGCCAGTGATTGATGAATTGGGTAAAAGAGGGAGCAAGCATGCAGCTGATGAATTTGCAGAAAGGATGATGGAAATGGCTTCAGAAACAGATTTCAACGAACATGAGAATAAGAATATTCGTGGAAGATTGAATAATAATGATGAAAGTGATTGGCAAAAGATAGTTCACAGAAACGATGGCAGTGGGATTGCACAGAAAACTCTTAAGCGTGTGTTAAAAGGCTGGGGTCAAGGAAGTATTGCAACTTCCCAGCCACAGAAATTTAGCACACGTGATCACTGGGATGGTGATGCTTAA | 2628 | 39.65 | MPMDRAAKLSKAIYLNSNNPNLAWLLFKRILSSPIPASSSFFKPSLQSVPAIARILITAKMHPQIDHLHQLLLSQHRDFAHPSGFSLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRCSLKESRVDCVIWLYKDMAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKHAADEFAERMMEMASETDFNEHENKNIRGRLNNNDESDWQKIVHRNDGSGIAQKTLKRVLKGWGQGSIATSQPQKFSTRDHWDGDA* | 876 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1487933 | 1494173 | - | CsaV3_7G001820.1 | Csa07g00182 | 535745 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa07g00182 | 875 | Gene3D | Tetratricopeptide repeat domain | 206 | 288 | IPR011990 | GO:0005515 | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 152 | 186 | IPR002885 | - | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 633 | 667 | IPR002885 | - | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 296 | 330 | IPR002885 | - | |
| Csa07g00182 | 875 | Pfam | PPR repeat family | 151 | 200 | IPR002885 | - | |
| Csa07g00182 | 875 | Pfam | PPR repeat family | 632 | 680 | IPR002885 | - | |
| Csa07g00182 | 875 | Pfam | PPR repeat family | 221 | 269 | IPR002885 | - | |
| Csa07g00182 | 875 | Pfam | PPR repeat family | 399 | 446 | IPR002885 | - | |
| Csa07g00182 | 875 | Pfam | PPR repeat family | 333 | 378 | IPR002885 | - | |
| Csa07g00182 | 875 | Pfam | PPR repeat family | 562 | 609 | IPR002885 | - | |
| Csa07g00182 | 875 | Gene3D | Tetratricopeptide repeat domain | 514 | 592 | IPR011990 | GO:0005515 | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 257 | 287 | IPR002885 | - | |
| Csa07g00182 | 875 | Gene3D | Tetratricopeptide repeat domain | 382 | 513 | IPR011990 | GO:0005515 | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 365 | 399 | IPR002885 | - | |
| Csa07g00182 | 875 | Pfam | PPR repeat | 741 | 767 | IPR002885 | - | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 435 | 469 | IPR002885 | - | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 598 | 632 | IPR002885 | - | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 187 | 221 | IPR002885 | - | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 563 | 597 | IPR002885 | - | |
| Csa07g00182 | 875 | Gene3D | Tetratricopeptide repeat domain | 289 | 381 | IPR011990 | GO:0005515 | |
| Csa07g00182 | 875 | Gene3D | Tetratricopeptide repeat domain | 593 | 695 | IPR011990 | GO:0005515 | |
| Csa07g00182 | 875 | Gene3D | Tetratricopeptide repeat domain | 696 | 817 | IPR011990 | GO:0005515 | |
| Csa07g00182 | 875 | Gene3D | Tetratricopeptide repeat domain | 45 | 205 | IPR011990 | GO:0005515 | |
| Csa07g00182 | 875 | PANTHER | OS02G0132100 PROTEIN | 6 | 828 | - | - | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 470 | 504 | IPR002885 | - | |
| Csa07g00182 | 875 | PANTHER | RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED | 6 | 828 | - | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 437 | 470 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 367 | 401 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 567 | 595 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 333 | 365 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 259 | 285 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 154 | 188 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 635 | 669 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 402 | 435 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 192 | 222 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 601 | 634 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 472 | 501 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 224 | 258 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 298 | 326 | IPR002885 | - | |
| Csa07g00182 | 875 | TIGRFAM | PPR: pentatricopeptide repeat domain | 530 | 564 | IPR002885 | - | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 528 | 562 | IPR002885 | - | |
| Csa07g00182 | 875 | MobiDBLite | consensus disorder prediction | 852 | 875 | - | - | |
| Csa07g00182 | 875 | Pfam | PPR repeat | 294 | 324 | IPR002885 | - | |
| Csa07g00182 | 875 | Pfam | PPR repeat | 524 | 555 | IPR002885 | - | |
| Csa07g00182 | 875 | Pfam | PPR repeat | 466 | 497 | IPR002885 | - | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 400 | 434 | IPR002885 | - | |
| Csa07g00182 | 875 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 222 | 256 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa07g00182 | - | - | - | csv:101217754 | 1762.66 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa02g00351 | Csa-Chr2:2431292 | Csa07g00182 | Csa-Chr7:1487933 | 1.47E-06 | dispersed | |
| Csa07g00182 | Csa-Chr7:1487933 | Csa07g01639 | Csa-Chr7:16843687 | 8.23E-28 | dispersed | |
| Csa07g00182 | Csa-Chr7:1487933 | Csa05g00627 | Csa-Chr5:4146565 | 4.54E-35 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g286 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Sed05g2175 | . | . | Bhi05g01588 | Tan02g0581 | Cmetu01g0188 | Lac12g0483 | Hepe02g0372 | . | . | Cla02g00351 | Cam02g0359 | Cec02g0360 | Cco02g0366 | Clacu02g0351 | Cmu02g0348 | Cre02g0679 | Cone12ag1274 | . | . | . | . | Csa07g00182 | . | Cme01g01150 | Blo04g00604 | . | . | Bda14g00645 | Bpe15g00786 | . | Bma03g00636 | . | . | . | . | . | . | . | Car19g00612 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi11g01282 | . | Chy01g00597 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0012269 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 29 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Csa07g00182 | Csa_Chr07 | FPKM | 9.449122 | 9.839454 | 14.71921 | 15.493952 | 9.688477 | 8.062424 | 8.508615 | 3.472811 | 3.235446 | 3.550316 |