Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00185 ATGGGGATTTGTTGGGGTTCTCCAGTTGATAATCATACTCCTAGTACCACTGGACATTTCAGTTCAGTTATATCCCAGACAACCAGTCTGACAACATCATCAACTATCAGCAACATCTCCAAGAACAGTCAATTCTCTGCAGCAAGTGGAGATGAAGTTTTTCCACATGGACAGATTTTGCCCTCTTCGAACTTGAGGGAGTATAGCTTGGCAGAGCTCAAAGCTGCAACCAAAAACTTCAGAGCTGAAGCATTGCTTGGTGAAGGAGGTTTTGGCAAGGTTTACAAAGGTTGGCTCGAGGAGAAGGGCCTTGGAAGGAAGGGAAATTCGATGGTTATTGCGGTAAAAAAGTTGAAATCTGACAGTGTGCAAGGACTTGAGGAGTGGCAGTCAGAAGTGGGCTTCTTGGGAAGACTTTCTCATCCAAATCTAGTGAAACTATTGGGTTATTGTTGGGAGGATCACGAGTTACTCCTTACTTATGAGTTCATGCAAAAAGGAAGCTTGGAGAACCATCTATTTGGAAGAGGATCGGCAGTTACGCCACTCGGATGGGATACTCGGCTTAAGATCGCTATAGGTGCTGCTCGAGGGCTAGCGTTCTTGCACACATCAGACAAGCAAGTAATTTATAGAGATTTCAAGGCTTCTAATATTCTGCTTGATGGGTCATATACAGCAAAGTTATCCGACTTTGGCTTGGCGAAATTGGGTCCTTCAGAAAGCAAATCTCATCTGACGACTCGAGTTATGGGCACACATGGTTATGCTGCTCCAGAATACGTTACCACAGGACATCTGTATGTCAAGAGCGATGTATATGGTTTTGGAGTCGTATTGATTGAAATGTTGACTGGTTTACGTGCTCTCGACGAAAATCGTCCAACTGGGCAAGAACACCTCACAGAATGGATAAAACCATTCTTATCAGAGAGAAGGAAGCTGAAAAACGTGATGGACTTCCGGTTGGAAGGAAAATATCCATCCAGATCTGCATTCCAAGTGGCTCAGCTAGCTCTACAATGTATTGAGCAAGAGCAGAAAAACCGACCATCGATGAAAGAGGTGGTCGAGACATTGGAACAAATCGAAACTGTGAACGAGAAACTGATCGAGACTGGTAACCGTGCTTCCCGTCTGGCATCAAATCGCAATGCTCATCAGCCACTTCACCATAATTCTCCACTTCACATGAAGCAATATGGAGGCCATGCTAATCAAACACCACCCAGATGCCGATAG 1242 44.69 MGICWGSPVDNHTPSTTGHFSSVISQTTSLTTSSTISNISKNSQFSAASGDEVFPHGQILPSSNLREYSLAELKAATKNFRAEALLGEGGFGKVYKGWLEEKGLGRKGNSMVIAVKKLKSDSVQGLEEWQSEVGFLGRLSHPNLVKLLGYCWEDHELLLTYEFMQKGSLENHLFGRGSAVTPLGWDTRLKIAIGAARGLAFLHTSDKQVIYRDFKASNILLDGSYTAKLSDFGLAKLGPSESKSHLTTRVMGTHGYAAPEYVTTGHLYVKSDVYGFGVVLIEMLTGLRALDENRPTGQEHLTEWIKPFLSERRKLKNVMDFRLEGKYPSRSAFQVAQLALQCIEQEQKNRPSMKEVVETLEQIETVNEKLIETGNRASRLASNRNAHQPLHHNSPLHMKQYGGHANQTPPRCR* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1503161 1507568 - CsaV3_7G001850.1 Csa07g00185 535748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00185 413 Gene3D Phosphorylase Kinase; domain 1 56 163 - -
Csa07g00185 413 Gene3D Transferase(Phosphotransferase) domain 1 164 386 - -
Csa07g00185 413 ProSitePatterns Protein kinases ATP-binding region signature. 86 117 IPR017441 GO:0005524
Csa07g00185 413 PANTHER BNAA09G08980D PROTEIN 11 391 - -
Csa07g00185 413 PANTHER OS01G0588500 PROTEIN-RELATED 11 391 - -
Csa07g00185 413 ProSiteProfiles Protein kinase domain profile. 80 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00185 413 CDD STKc_IRAK 86 363 - -
Csa07g00185 413 Coils Coil 353 373 - -
Csa07g00185 413 Pfam Protein tyrosine and serine/threonine kinase 83 360 IPR001245 GO:0004672|GO:0006468
Csa07g00185 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Csa07g00185 413 MobiDBLite consensus disorder prediction 386 413 - -
Csa07g00185 413 SUPERFAMILY Protein kinase-like (PK-like) 60 363 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00185 - - - csv:101210490 811.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00023 Csa-Chr3:319291 Csa07g00185 Csa-Chr7:1503161 2.92E-123 dispersed
Csa03g00025 Csa-Chr3:326108 Csa07g00185 Csa-Chr7:1503161 2.48E-166 dispersed
Csa06g01960 Csa-Chr6:17701773 Csa07g00185 Csa-Chr7:1503161 5.65E-140 dispersed
Csa07g00185 Csa-Chr7:1503161 Csa05g01852 Csa-Chr5:21822308 8.44E-136 dispersed
Csa07g00185 Csa-Chr7:1503161 Csa06g01482 Csa-Chr6:12563836 2.32E-136 transposed
Csa07g00185 Csa-Chr7:1503161 Csa04g01496 Csa-Chr4:14694357 2.24E-136 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g292 . . . . . . . . . Cmo11g01785 . . . . . Cpe04g00630 . Bhi05g01584 . . . . . . Cla02g00348 . . . . . . Cone12ag1276 Cone8ag1330 Cone3ag1248 . . Csa07g00185 . Cme01g01148 . Blo13g00474 . . . . . Bma08g00718 . . . Cma11g01334 Cma19g00797 Car11g01412 . . . . . . . . . . . . . . . . . Lsi11g01284 . Chy01g00595 Cme11g01308
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004416 1 3 2 1 1 0 2 0 0 1 1 0 2 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78457 PF07714 PK_Tyr_Ser-Thr 6.70E-46 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00185 Csa_Chr07 FPKM 24.26288 25.050459 28.034788 25.757343 25.543362 24.910149 21.695492 26.333889 28.896013 27.009426