Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00186 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTCAAGGAACAACAAGAACAACAACACCAACAACATCAAACAAAACGAATCAACAACAACAACAACTCTTCCCCCTCAATTTCCAACCCTAATTACGCCTCCTCAACTCCCTTGCGCCGATCTACTCGCCGGAATCCCAACTCCGAAGACCTCACTCCCGATAACGTCACTGATGACCACCCAGATGCTGAATACAACCACCAATTGGCTGGTAGCCGCCGCGAGAAGAAACTCAAGCTTGTTCTCAGATTGCACTCCCAGAAATCCCCAGTCAATTCTTCGTCTCTTAATTCTTGTGGGTCTGATTCTAATGCGGAGGGGGATGGTAATGCTGCTTCGATTAACAAGAAGCGGAAGATCGGTTCGATTGCGGAGGGATCTAGGATTCAAGACTCCGAGAAGGGTGAAAAGTCCATTTCTGCTACAAACCCATCAGAAACCCTTCAAGGGTTGCATATGGATTCGGGACCCTCGACGCCTTTACCAGATAAGAAGCTTTTAGTTTTCATCCTCGACAGGCTTCAAAAGAAGGACGTCTATGGTGTGTTTTCCGAACCAGTGGACCCCAACGAGCTTCCAGACTATCACGAAATTATAGATCATCCTATGGATTTTGGGACTGTGCGGGAGAAGCTTACTTCTGGAGCTTATAGCACCTTGGAACAGTTCGAAAAAGACGTTCTCTTAATCAGTTCGAATGCAATGCAATATAATTCGCCGGATACTATATATTTTCGGCAGGCACGTACCATACAAGAGTTGGCAAAAAAGAATTTTAAGAACTTGAGACAAGATAGTGATGATAATGAACCAGAACCTAAAGTGGTGAGAAGAGGTAGACCACCAACCAAGAATTTAAAGAAACCATTAGGTAGACCTTCCTTGGAACGTGCTGGTTCAGAGTTTTCCCCAGATGCCACTCTTGCTACTGGTGGTGAAAATGCAAATCGGTCCAGCGATTTGAGGAAAGGTCTTCATCATTTGGAAAAGCCTAGTTTTGCTGATTTTTCTGGGAGATTCTCCTTTTCTTCTAATAATAGTGACGCCGCATTTAATTTGTTTAACCCGAGCAGATTTGATAGAAGTGAGGATATTACAGGTTCTGCACTGAGATTTAATTCAGTGAGGCAGGGAAAAAAACCTATTGTCTCCGAGGAGAATAGGCGTAATACATATAGCCAATTTCAGGCGGCAACTGCTATGCTAGAGCCCGCTGTGTTGAATACATTTGATAGAGAGAGGAAGGTTTTAATGCCAGTTGGCCTTTTCTTGGAGCATGCATATGCACGAAGCCTCGCTCGATTTGCTGCGGATCTTGGATCTGTGGCTTGGACAGTTGCTTCTAAGAAGATTGAAAGATCTTTGCCTTCAGGTTCGGGTTTCGGTCCTGGATGGGTTATAGAAAATGATATCACACCAAAGAGGGTGTTTCTACCACAAGCAGAACCCAGTAAAATGTCGACGTTGCAGCCCTTTCTTGGGCATGAAAGTTCGGATCCAGATGTAAAGCCTCTTACTAATGAACAAAAGAGGGTTCGGTCATCTGACAACTCTGAAGCTGATACATCACATAAGACGCATGATGAGCTTTCTCGTGCCCCCAGTTCAGGTGGCCAGGTAAACAGGCCTCCAACTGAGTTTGTTGCAGTTTCGTCATCACCATCGAGTACTCAACAATCTTCTGAGCAATGCAAGGGGCAGGCGGAAACAGTTGAAGGATCGAAACCCAGTGGCAATTATAATGTATTGGAAAGTAGTATTCCAATCTCAAGGCCTTCATTTCATAAACACCATAGTCCATCAATCCACCCTGGTATGAATGGATTCAATGGAGCTTATGGTTTTGATCTCTCTGCTCACAGGGGGAAACTAATAGGACCGTCGGATTCCGCTGGTGTGAAGCCTCAGTCATCTCAAATGCTCGAGACGATTTCCAGGACAAATGCTAATTTCATCCTTCCAGCAATGGCAACCAATCTGAACCCGAAAGAACCAAAATGCCCAGAAAACAATCCTAGTACAACAAACTCTTCCAGTTCATTGGTTGGGTCGGGGAGCGACGGTCTTATCAACCCTGTAGCCAGTCCACATTTACGATCACCTTGGCATCAAGGAAAACAACCAGCAGAGAAAACAGATGCAGTAGTAACAACAATATACAAACCGGAATCAGTTCCTCCGGACCTGAACGTGAGATTTAAATCTCCAGGATCACCTAGCTCTAGTAAGGTGGACTCTGCTCACCCTGATTTGGTTTTACAGCTATGA 2340 45.04 MGKVVERKKRKKGRPSLLDLQKRNLKEQQEQQHQQHQTKRINNNNNSSPSISNPNYASSTPLRRSTRRNPNSEDLTPDNVTDDHPDAEYNHQLAGSRREKKLKLVLRLHSQKSPVNSSSLNSCGSDSNAEGDGNAASINKKRKIGSIAEGSRIQDSEKGEKSISATNPSETLQGLHMDSGPSTPLPDKKLLVFILDRLQKKDVYGVFSEPVDPNELPDYHEIIDHPMDFGTVREKLTSGAYSTLEQFEKDVLLISSNAMQYNSPDTIYFRQARTIQELAKKNFKNLRQDSDDNEPEPKVVRRGRPPTKNLKKPLGRPSLERAGSEFSPDATLATGGENANRSSDLRKGLHHLEKPSFADFSGRFSFSSNNSDAAFNLFNPSRFDRSEDITGSALRFNSVRQGKKPIVSEENRRNTYSQFQAATAMLEPAVLNTFDRERKVLMPVGLFLEHAYARSLARFAADLGSVAWTVASKKIERSLPSGSGFGPGWVIENDITPKRVFLPQAEPSKMSTLQPFLGHESSDPDVKPLTNEQKRVRSSDNSEADTSHKTHDELSRAPSSGGQVNRPPTEFVAVSSSPSSTQQSSEQCKGQAETVEGSKPSGNYNVLESSIPISRPSFHKHHSPSIHPGMNGFNGAYGFDLSAHRGKLIGPSDSAGVKPQSSQMLETISRTNANFILPAMATNLNPKEPKCPENNPSTTNSSSSLVGSGSDGLINPVASPHLRSPWHQGKQPAEKTDAVVTTIYKPESVPPDLNVRFKSPGSPSSSKVDSAHPDLVLQL* 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1513850 1519128 - CsaV3_7G001860.1 Csa07g00186 535749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00186 779 MobiDBLite consensus disorder prediction 284 343 - -
Csa07g00186 779 PRINTS Bromodomain signature 202 215 IPR001487 GO:0005515
Csa07g00186 779 PRINTS Bromodomain signature 216 232 IPR001487 GO:0005515
Csa07g00186 779 PRINTS Bromodomain signature 232 250 IPR001487 GO:0005515
Csa07g00186 779 PRINTS Bromodomain signature 250 269 IPR001487 GO:0005515
Csa07g00186 779 SMART bromo_6 180 288 IPR001487 GO:0005515
Csa07g00186 779 MobiDBLite consensus disorder prediction 17 34 - -
Csa07g00186 779 SUPERFAMILY Bromodomain 181 292 IPR036427 GO:0005515
Csa07g00186 779 MobiDBLite consensus disorder prediction 514 603 - -
Csa07g00186 779 MobiDBLite consensus disorder prediction 556 603 - -
Csa07g00186 779 Pfam Bromodomain 194 273 IPR001487 GO:0005515
Csa07g00186 779 MobiDBLite consensus disorder prediction 160 178 - -
Csa07g00186 779 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 779 - -
Csa07g00186 779 ProSitePatterns Bromodomain signature. 205 261 IPR018359 -
Csa07g00186 779 MobiDBLite consensus disorder prediction 525 555 - -
Csa07g00186 779 MobiDBLite consensus disorder prediction 145 159 - -
Csa07g00186 779 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 779 - -
Csa07g00186 779 MobiDBLite consensus disorder prediction 1 16 - -
Csa07g00186 779 MobiDBLite consensus disorder prediction 35 66 - -
Csa07g00186 779 MobiDBLite consensus disorder prediction 67 98 - -
Csa07g00186 779 Gene3D - 185 302 IPR036427 GO:0005515
Csa07g00186 779 MobiDBLite consensus disorder prediction 284 303 - -
Csa07g00186 779 MobiDBLite consensus disorder prediction 683 779 - -
Csa07g00186 779 CDD Bromodomain 187 281 - -
Csa07g00186 779 MobiDBLite consensus disorder prediction 110 183 - -
Csa07g00186 779 MobiDBLite consensus disorder prediction 688 710 - -
Csa07g00186 779 MobiDBLite consensus disorder prediction 1 98 - -
Csa07g00186 779 MobiDBLite consensus disorder prediction 110 134 - -
Csa07g00186 779 ProSiteProfiles Bromodomain profile. 199 269 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00186 K22184 BRD9; bromodomain-containing protein 9 - csv:101218234 1434.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00186 Csa-Chr7:1513850 Csa03g02520 Csa-Chr3:23607465 8.01E-13 dispersed
Csa07g01101 Csa-Chr7:10640198 Csa07g00186 Csa-Chr7:1513850 5.19E-84 transposed
Csa07g01562 Csa-Chr7:15956618 Csa07g00186 Csa-Chr7:1513850 2.03E-08 transposed
Csa04g02708 Csa-Chr4:26182005 Csa07g00186 Csa-Chr7:1513850 3.45E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00186 Csa_Chr07 FPKM 18.784056 19.855522 16.891182 16.558304 21.056366 21.877792 21.108513 25.085379 23.645348 23.759426