Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00188 ATGGCATCGGCGCAGAACCCAGCGCCGAACGTGGATCTCTTCGATGCATACTTTCGACGTGCCGATTTGGACCGCGATGGTCGAATTAGTGGCGCTGAAGCCGTTTCCTTCTTTCAAGGCTCTGGATTGCCTAAACAGGTTCTTGCTCAGATTTGGGCGCTTTCGGACCCTAGACAGATTGGGTTCCTTGGTCGGGCGGAGTTTTATAATGCCCTTAGACTGGTTACTGTAGCACAGAGTAAGAGGGAATTAACTCCTGATATTGTGAAAGCAGCATTGTTTAGCCCAGCTGCAGCTAAAATACCAGCACCACAAATAAATTTCAATGCCCAGCCTGCATCTCAGTTCAATTCTACTGCAGCAGTACCTTCACCTCAGAGTGGCATTGTTGCTCAAACACCGTCCCCAGGTTCAGGGGCGAATGCTCCACCAGTTTCTTCTAGGGAGAGTCAATCTGTAAGGCCTTCGTTGGCAGCTCCAAATTCTGCTTTCCGTCCAGCACAGGGATTTCCAGGAGTAGGTGCTGTTTCGGGGCCGCCTCCAACTAATTCAAACATCTCAAATGACTGGGTTAGTGAACGTGCCAGTGGAGTTCAAGGGACACCCTCACAACCTCCGAATAGAGGACTCAGTCCCGCTGGAACACAGGTTGGATTTGGGCAATCAAGTGCAGGACTAACAGCTTCTCTACCCCCAAGGCCTCAGTCTGCTCCTGGAGTAACGCCAGCTACACCATCACCTTTGGAAAGTAAAGTGCAAGGTATTACTGGAAATGGGACTGCTTCTGGATCTTATTTTGGACGAGACGCCTTTGGTGCAACCCCAATTTCCTCAAAACAAGATGTCCCTGCTGGCAATAAAACTTCCACATCAGTTGCTGTTCCCGTATCTCCTGTCACACAACCAATAGTTAGAGCAAGTTCCCTTGATTCTTTGCAGAGTTCATTTATGAAACCACCTCTTGCTAATCAGGCCCAACGGAACCAGGCATTTGGGAAGTCCAATCAACAGACCGTACCGCAATCTGGTTCCTCTGCATTTTTGGCAGGATCTCAGAACTCTGTTTCTGGACAGTCTCAGCGTCCCTGGCCTAGAATGACACAGACTGATGTGCAGAAGTATACTAAAGTTTTTGTTGAAGTAGATAAGGACAGAGATGGAAAAATTACCGGTCAAGAAGCACGGAACTTGTTCTTGAGTTGGAGACTACCCAGAGAGGTTTTAAAGCAAGTGTGGGACTTATCCGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTATCGCACTCTATTTGTTGGAGCGGCATAGGGAAGGGCATGTTCTTCCTGCCATGCTTCCTAGCAACATCATGTTTGATTTTTCCAGCAATGGTCATCCTGTGACTCCAGCTGCATCTAACTATAGCAATGCAGGATGGAGACCACCCACAGCTGGTTTCCAACAGCACCAAGGGGTTCCTGGGTCTGGTAATGTGCAGGGAGCTCCTACTGTTGGAGTACGCCCACCTATACCTGCTACAGCCTCCCCAGTTGAGGGTGAGCAACAAACCAGTCAACCTAAATCGAAGGTTCCCGTGCTGGAGAAAAATCTTATCAGTCAGCTTAGTACAGAGGAGCAGAACTCCCTGAACTCAAAGTTTCAAGAAGCAGCAGATGCTGAGAAAAAGGTTGAAGAATTGGAGAAAGAAATTTTGGAGTCTAGACAGAAAATTGAGTATTATCGTACTAAAATGCAGGAACTTGTTTTGTATAAGAGCAGATGTGACAATAGGCTGAATGAAATATCTGAAAGAGTGTCTTCAGATAAACGTGAGGTAGAATCCCTTGCTAAGAAATATGAAGAGAAATACAAACAATCTGGTGATGTAGCCTCCAGATTAACCGTTGAAGAAGCTACATTCCGTGATATACAGGAAAAGAAGATGGAACTGTATCAGGCGATTGTAAAGATGGAACAAGATGGTAGCGCAGATGGTGTTCTTCAGGCACGTGCAGATCGTATTCAGTCAGATATTGAAGAGTTAGTGAAATCTCTCAATGAACGCTGTAAGAGTTACGGTTTACGTGCAAAACCAATAACTCTGTCTGAACTTCCTTTCGGTTGGCAGCCTGGCCTCCAAGTGGGAGCTGCTGACTGGGATGAAGATTGGGATAAATTTGAAGACGAAGGCTTCTCTGTTGTCAAGGAGCTCACTCTTGATGTGCAAAATGTCATTGCCCCTCCTAAGCAGAAATCTAAGTCTGTTCAAAAAGGAAAAGTTGACAGCCAAAACGTTACACCGGCAGCTGATGATGACACCAAGGATGGAGATTCTGGACCAAATGCTGATACCAAAAGAGATAAGCCTCCTAGTATGGACGAAACAGCTGTTGAAAATGGTTCTGCACACGATAATAAAAGTGAAGATGGGTCAGTCAAAAGTGCTCCTAACAGCCCCTTTACAGCCAAAAGTGCTCCAAACAGCCCCTTTGCACCCAAAAGTTCTCCTGGCAGCCCCTTTGCACCCAAAAGTGCTCCTGGCAGCCCCTTTGCACCCAAAAGTGCTCCTGGCAGCCCCTTTGCAAGTAGTATTATTGGAAGTCCCAAGGAATATATGGATTCCCATTTTGGAAAGACTGCTGGCTTTGATTCTTCACCCCGTGATAAGGACACTTTAAGTGATCATGGAGGTGCGGGATCTGTGTTTTCTGGTGACAAGAGCTATGACGAACCAGCATGGGGACCATTTGATGCAAACGATGATATTGACTCTGTTTGGGGCTTTAACGCAGGAGGTTCCACCAAGACTGACAATGATGTAAACCGGGACAACTACTTTTTCGATTCTGGGGATTTGGGCTTGAATCCTATCAGAACGGATCCATTCCAGGCTAAGAGAAGCACTTTTGCTTTTGACGAGTCAGTTCCCAGCACCCCACTCTTCAACTCGGGCAATTCGCCGCATAATTACCACGAGGGATCAGAAGCAGGCTTTGACAGTTTCTCAAGGTTTGATACTTCCAGTGTGCACGACAGTGGTTTTTTCCCACCACGTGACACATTTTCACGCTTCGATTCAATGCGGAGCAGTAGAGATTTTGACCAGGGTTCTGGATTCTCATCATTTGGTCAATTCGATACAACGCACAACAGTAGAGACTTCGACCAGGGTGGACCCTCATCACTGACGCGTTTTGATTCAATGCGTAGCACTAAGGACTTCGACCAGGGATTCCCTTCATTGTCACGATTTGATTCGATGCAAAGCAGCAAGGACTTCGACCAGGGATTCCCTTCATTTTCAAGATTCGATTCAATGCGCAGCAGCAAAGACTTCGATCAGGGTCATGGATTCCCATCATTTGACGATCCAGATCCTTTTGGATCAACAGCGCCATTTAGGGCGTCCCTTGATAATCAAACTCCAAAGAAAGGATCAGACAATTGGAGTGCGTTTTAG 3447 46.62 MASAQNPAPNVDLFDAYFRRADLDRDGRISGAEAVSFFQGSGLPKQVLAQIWALSDPRQIGFLGRAEFYNALRLVTVAQSKRELTPDIVKAALFSPAAAKIPAPQINFNAQPASQFNSTAAVPSPQSGIVAQTPSPGSGANAPPVSSRESQSVRPSLAAPNSAFRPAQGFPGVGAVSGPPPTNSNISNDWVSERASGVQGTPSQPPNRGLSPAGTQVGFGQSSAGLTASLPPRPQSAPGVTPATPSPLESKVQGITGNGTASGSYFGRDAFGATPISSKQDVPAGNKTSTSVAVPVSPVTQPIVRASSLDSLQSSFMKPPLANQAQRNQAFGKSNQQTVPQSGSSAFLAGSQNSVSGQSQRPWPRMTQTDVQKYTKVFVEVDKDRDGKITGQEARNLFLSWRLPREVLKQVWDLSDQDNDSMLSVREFCIALYLLERHREGHVLPAMLPSNIMFDFSSNGHPVTPAASNYSNAGWRPPTAGFQQHQGVPGSGNVQGAPTVGVRPPIPATASPVEGEQQTSQPKSKVPVLEKNLISQLSTEEQNSLNSKFQEAADAEKKVEELEKEILESRQKIEYYRTKMQELVLYKSRCDNRLNEISERVSSDKREVESLAKKYEEKYKQSGDVASRLTVEEATFRDIQEKKMELYQAIVKMEQDGSADGVLQARADRIQSDIEELVKSLNERCKSYGLRAKPITLSELPFGWQPGLQVGAADWDEDWDKFEDEGFSVVKELTLDVQNVIAPPKQKSKSVQKGKVDSQNVTPAADDDTKDGDSGPNADTKRDKPPSMDETAVENGSAHDNKSEDGSVKSAPNSPFTAKSAPNSPFAPKSSPGSPFAPKSAPGSPFAPKSAPGSPFASSIIGSPKEYMDSHFGKTAGFDSSPRDKDTLSDHGGAGSVFSGDKSYDEPAWGPFDANDDIDSVWGFNAGGSTKTDNDVNRDNYFFDSGDLGLNPIRTDPFQAKRSTFAFDESVPSTPLFNSGNSPHNYHEGSEAGFDSFSRFDTSSVHDSGFFPPRDTFSRFDSMRSSRDFDQGSGFSSFGQFDTTHNSRDFDQGGPSSLTRFDSMRSTKDFDQGFPSLSRFDSMQSSKDFDQGFPSFSRFDSMRSSKDFDQGHGFPSFDDPDPFGSTAPFRASLDNQTPKKGSDNWSAF* 1149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1532787 1542134 + CsaV3_7G001880.1 Csa07g00188 535751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00188 1148 MobiDBLite consensus disorder prediction 117 249 - -
Csa07g00188 1148 MobiDBLite consensus disorder prediction 504 526 - -
Csa07g00188 1148 MobiDBLite consensus disorder prediction 1027 1101 - -
Csa07g00188 1148 Gene3D - 9 104 - -
Csa07g00188 1148 Coils Coil 594 618 - -
Csa07g00188 1148 Gene3D - 365 453 - -
Csa07g00188 1148 MobiDBLite consensus disorder prediction 764 806 - -
Csa07g00188 1148 ProSiteProfiles EH domain profile. 370 453 IPR000261 GO:0005515
Csa07g00188 1148 MobiDBLite consensus disorder prediction 1129 1148 - -
Csa07g00188 1148 Pfam EF hand 15 31 IPR002048 GO:0005509
Csa07g00188 1148 MobiDBLite consensus disorder prediction 512 526 - -
Csa07g00188 1148 Pfam Cytoskeletal-regulatory complex EF hand 364 435 IPR000261 GO:0005515
Csa07g00188 1148 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Csa07g00188 1148 CDD EH 14 80 IPR000261 GO:0005515
Csa07g00188 1148 PANTHER EH DOMAIN 9 1042 - -
Csa07g00188 1148 PANTHER EH DOMAIN 1073 1148 - -
Csa07g00188 1148 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 9 1042 - -
Csa07g00188 1148 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1073 1148 - -
Csa07g00188 1148 SMART eh_3 362 458 IPR000261 GO:0005515
Csa07g00188 1148 SMART eh_3 2 98 IPR000261 GO:0005515
Csa07g00188 1148 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515
Csa07g00188 1148 MobiDBLite consensus disorder prediction 117 158 - -
Csa07g00188 1148 MobiDBLite consensus disorder prediction 807 827 - -
Csa07g00188 1148 MobiDBLite consensus disorder prediction 744 911 - -
Csa07g00188 1148 MobiDBLite consensus disorder prediction 178 230 - -
Csa07g00188 1148 CDD EH 374 440 IPR000261 GO:0005515
Csa07g00188 1148 SMART efh_1 373 401 IPR002048 GO:0005509
Csa07g00188 1148 SMART efh_1 407 435 IPR002048 GO:0005509
Csa07g00188 1148 SMART efh_1 13 41 IPR002048 GO:0005509
Csa07g00188 1148 SUPERFAMILY EF-hand 360 453 IPR011992 -
Csa07g00188 1148 SUPERFAMILY EF-hand 10 93 IPR011992 -
Csa07g00188 1148 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Csa07g00188 1148 ProSiteProfiles EF-hand calcium-binding domain profile. 406 438 IPR002048 GO:0005509
Csa07g00188 1148 MobiDBLite consensus disorder prediction 1027 1148 - -
Csa07g00188 1148 Coils Coil 545 579 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00188 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101215882 2239.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03469 Csa-Chr1:31691404 Csa07g00188 Csa-Chr7:1532787 6.11E-14 transposed
Csa03g00482 Csa-Chr3:4062082 Csa07g00188 Csa-Chr7:1532787 1.55E-06 transposed
Csa04g02715 Csa-Chr4:26218771 Csa07g00188 Csa-Chr7:1532787 2.04E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00188 Csa_Chr07 FPKM 7.986111 7.807137 25.241825 24.226355 2.417955 1.335982 1.678712 125.310364 125.859749 109.988571