Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00194 ATGTTGTACTTTGTTGATCCGTTTCGGTCAAACGAGTCGAGTTTCGGCTTGATGTTTATGAATATGGTTTGGCTTCTTTTAGTACTTTTTTGTGTTCAAGGAATAATTTCAGAAGGGAGTTCAAGAAATGAAGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTGAATGGGAAAGTTTCTAAGATTGCCATTGAAGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGTGGAAGAAAGCTATCTATTTCAATCCATGATGCAAATTATAGTGGATTTCTTGGTATCACAGGAGCAATGAAGTACATGGTATCTGACACAGTTGCAATCCTTGGTCCAGAAGATTCTACAATGGCTCATATTCTTTCCCATCTTTCTAATGAACTCCATATCCCATTACTCTCATTTACAGCATTAGATCCAACACTTTCATCATTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATAAGTTCCAAATGACTGCAATTGCTGATATAATTCATTATTACGATTGGCATGACATCGTTGTAGTTTACACCGACGACGATCAATGTCGAAACGGTATGATTGAATTAGGTGATAAACTTGAAGAGAGAAGCTTGAAAATTTCCTCTAAAGTCCCACTTCCTCCTTACCAAACAGCAACAAGAACTCAAGTTCAAGATGCACTGGTAAAGATCAAAATGATGGAATCTCGAGTAATTGTATTGTACACTTTTTCGAAAACCGGTTTCTTGGTTTTCGAAGTGGCTCGAAGCCTTAAAATGATGGAACCTGGTTATGTGTGGATAACTTCTAGTTGGCTATCAACAGAAATAGATTCTTCTTCATCACTTCCTTTGAACATTCCCAACTCTATCCAAGGGGTTCTTACGCTTCGTCTACACACGCCCGATTCGAAAAGTAAGCAATCTTTTATATCGAGATGGAATGAGTTGAGTAACACCTCGTCAATTAGGTTGAATACATATGGCTTATATGCTTATGATACTGTTTGGATGATTGCAAGAGGTGTGAAAAAGTTATTGGATCGAAATGGGACTATCTCATTCTCTAAAGACACAAAAAGTGCTGGTATTCTTAATGGAGAGACCTTGGATTTTAGTTCACTAAGAATCTTCAATGAAGGAAATGCTTTGCTTAACAATTTATTGAATACAAGTATGATGGGTTTAACAGGGCCTATTCAGTTTCAAGATAAATCCCCTGTCCGTCCTTCATATGATATCTTAAATGTTGTGAAATCTGGTATGAAGAGAATTGGATATTGGTCTAACTATTCAGGTTTATCTGTTGTGGCACCTGAAACGTTGTATCGAAAATCATTTAACCGTTCTATGTCAACCAATCAGTTAAATAGCACAATGTGGCCTGGGGGATTGGCAACAAAACCTCGGGGTTGGGTTCTTCCACTAGATGGAAGACGGTTACGAATTGGCGTTCCACGAAGAGTTAGTTATCAGGAGTTCGTGATGCCTGGAAATGGTACTGGAACAATCAAAGGATATTGTATTGATGTCTTTACTGCTGCTATCAATTTGCTTCCATATGCAGTTAAATATGAATTCGTTTTGTTTGGAGATGGTGAGGAGAATCCTAGCTATCTTGAGCTTGTAAATAAGGTTGAACAGAAAGAATTTGATGCTGCTGTTGGTGATATTGCAATTGTGACTAGTCGGACGAAGATTGTCGATTTTACGCAGCCCTATATCGACTCAGGGCTTGTAGTTTTGACCCCTATGAAGAAGGTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCTCACCAATGATGTGGGCTGTCACAGCAGCTTTTTTCTTCCTCATTGGATTAGTTGTGTGGACATTAGAACATCGAAAAAACGACGAATTTCGAGGACATCCAAGAACGCAAATTGTCACGATTCTCTGGTTTGGCTTCTCAACTATGTTTTTTGCACAAAGTAAGTCTTTTACTTGA 1980 38.33 MLYFVDPFRSNESSFGLMFMNMVWLLLVLFCVQGIISEGSSRNEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIHDANYSGFLGITGAMKYMVSDTVAILGPEDSTMAHILSHLSNELHIPLLSFTALDPTLSSLQYPYFIQTAPNDKFQMTAIADIIHYYDWHDIVVVYTDDDQCRNGMIELGDKLEERSLKISSKVPLPPYQTATRTQVQDALVKIKMMESRVIVLYTFSKTGFLVFEVARSLKMMEPGYVWITSSWLSTEIDSSSSLPLNIPNSIQGVLTLRLHTPDSKSKQSFISRWNELSNTSSIRLNTYGLYAYDTVWMIARGVKKLLDRNGTISFSKDTKSAGILNGETLDFSSLRIFNEGNALLNNLLNTSMMGLTGPIQFQDKSPVRPSYDILNVVKSGMKRIGYWSNYSGLSVVAPETLYRKSFNRSMSTNQLNSTMWPGGLATKPRGWVLPLDGRRLRIGVPRRVSYQEFVMPGNGTGTIKGYCIDVFTAAINLLPYAVKYEFVLFGDGEENPSYLELVNKVEQKEFDAAVGDIAIVTSRTKIVDFTQPYIDSGLVVLTPMKKVNSSPLAFLRPFSPMMWAVTAAFFFLIGLVVWTLEHRKNDEFRGHPRTQIVTILWFGFSTMFFAQSKSFT* 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1584463 1590436 + CsaV3_7G001940.1 Csa07g00194 535757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00194 659 SUPERFAMILY Periplasmic binding protein-like II 461 610 - -
Csa07g00194 659 Pfam Bacterial extracellular solute-binding proteins, family 3 493 588 IPR001638 -
Csa07g00194 659 Gene3D - 477 593 - -
Csa07g00194 659 PANTHER GLUTAMATE RECEPTOR 3.6 33 655 - -
Csa07g00194 659 SMART GluR_14 484 647 IPR001320 GO:0015276|GO:0016020
Csa07g00194 659 Gene3D - 64 411 - -
Csa07g00194 659 CDD PBP1_GABAb_receptor_plant 47 440 IPR044440 -
Csa07g00194 659 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 655 - -
Csa07g00194 659 SUPERFAMILY Periplasmic binding protein-like I 40 474 IPR028082 -
Csa07g00194 659 Gene3D - 594 659 - -
Csa07g00194 659 Gene3D - 161 436 - -
Csa07g00194 659 Pfam Receptor family ligand binding region 64 421 IPR001828 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01292 Csa07g00194 CCT
Csa02g01292 Csa07g00194 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00194 Csa-Chr7:1584463 Csa07g00367 Csa-Chr7:2736621 4.87E-151 dispersed
Csa04g02721 Csa-Chr4:26244040 Csa07g00194 Csa-Chr7:1584463 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00194 K05387 - csv:101208602 1290.02