Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00211 ATGGCTGGTTTCGTAGCTATGATAGTCTACTATTTGGTCCTTCTTCAAACATTTAATATCTTTGCGGCTAAGGATGAAGAATGGATATCTGCTACTGCAACATACTCCAAAGAAACAGATGGGTCAATTGTTACGGAAGGTGCTTGTGGTTACGGAGACCTACATAAGATAAGTTATGGAAAATACAGCGCTGGACTGAGTAGCATGTTGTTTAATAGAGGAAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGATCACATCTTGTGGTGCTTGCAAGGAAGCCCGACTGTCATTCTAACAGCCACCGACTTCTGTCCTCCTAATTACGGCTTGTCTTCCGATTATGGCGGGTGGTGTAATTTTCCCAAGGAGCACTTTGAGATGTCAGAGGCAGCATTTGCTGAAATAGCAGAGAAGAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGAATGAGATTCACAGTTAGTGGGAATTATCGATTCTTTCAAGTTCTGATTACAAATGTTGGAATGGATGGTGAATTAGTGGCAGTGAAAGTAAAAGGATCAAGAACAGGATGGATACCATTGGCAAGGAACTGGGGACAGAACTGGCAAAGCAATGTCAATCTTCACGGACAACCTCTCTCTTTTGAAGTTACCTCCAGCAGTGGAAGAGCACTTACTTCCTACAGCGTTGCACCTGGAAACTGGCAGTATGGGCAGACATTTGAAGGGAAACAATTTTGA 759 43.35 MAGFVAMIVYYLVLLQTFNIFAAKDEEWISATATYSKETDGSIVTEGACGYGDLHKISYGKYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFAEIAEKKADIVPVQYRRVRCDRSGGMRFTVSGNYRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYSVAPGNWQYGQTFEGKQF* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1682194 1686923 + CsaV3_7G002110.1 Csa07g00211 535774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00211 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Csa07g00211 252 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Csa07g00211 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Csa07g00211 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Csa07g00211 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Csa07g00211 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Csa07g00211 252 PANTHER EXPANSIN-A20 6 252 - -
Csa07g00211 252 Gene3D - 14 156 IPR036908 -
Csa07g00211 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Csa07g00211 252 SUPERFAMILY Barwin-like endoglucanases 27 178 IPR036908 -
Csa07g00211 252 PANTHER EXPANSIN-A15 6 252 IPR002963 GO:0009664
Csa07g00211 252 Gene3D - 160 250 IPR036749 -
Csa07g00211 252 SMART dpbb_1 63 150 IPR007112 -
Csa07g00211 252 Pfam Lytic transglycolase 64 150 IPR009009 -
Csa07g00211 252 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Csa07g00211 252 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Csa07g00211 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Csa07g00211 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Csa07g00211 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Csa07g00211 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Csa07g00211 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Csa07g00211 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Csa07g00211 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Csa07g00211 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Csa07g00211 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Csa07g00211 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00211 Csa-Chr7:1682194 Csa01g02423 Csa-Chr1:21492231 9.87E-90 dispersed
Csa07g00211 Csa-Chr7:1682194 Csa06g01479 Csa-Chr6:12545225 1.88E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00211 - - csv:101213241 525.783