Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00215 ATGGCAACTATAGCAGGGACACCTTGGGTGAGGATTAAGGCCTTCCCTATCCTGAATCCTCCAATTCTACATCGCTCAAACTTTTATTTTGGAGTGAGATGCATCCCAAAATTTCGAAGGAGTTTCTCGGTTTCGGCTTCTGTAGATAAGGTTGATGGAGGAGATGTTCGAGTCCGTTTTGCTCCTTCGCCTACTGGAAATCTTCATGTTGGTGGAGCAAGAACTGCCCTCTTCAATTACTTGTTTGCTAGGGCCAATGGTGGGAAGTTTGTTCTGAGAATTGAAGATACTGACTTGGAGAGGTCCACTCGACAATCTGAAGAGGCTGTGTTGAGAGATCTTTCATGGCTTGGTCTCGATTGGGATGAAGGTCCAAATGTTGGTGGAGAATACGGTCCTTACCGCCAATCAGAAAGAAATGCTCTATACAAACAGTACGCGGAGAAGCTTTTAGAATCTGGTCAAGTATATCGCTGCTTTTGTTCAAATGAGGAACTAGAAAAAATGAAGGAGGTTGCAAAGCTGAAGCAACTGCCTCCTGTATACATGGGAAAGTGGGCCAGTGCTACTAATGAAGAAGTACGGGAAGAATTAGAAAAGGGTACCCCTTACACGTTCCGATTTCGCGTGCCTCAAGAAGGGAGTTTGAAAATCAATGATCTCATTCGAGGGGAAGTTAGTTGGAACTTGGATACACTTGGAGATTTTGTAATTATGAGGAGCAATGGGCAACCTGTCTATAATTTTTGTGTCACTGTTGATGATGCTACCATGGCCATCTCACATGTCATAAGAGCGGAGGAACATTTACCGAACACTCTTAGGCAGGCGCTGATATATAAGGCTCTTGGTTTCCCAATGCCTTACTTTGCGCATGTTTCCTTAATTCTTGCACCTGATCGTAGTAAACTATCGAAACGACATGGTGCGACATCAGTTGGTCAGTTCAGGGAAATGGGATATCTACCCGAGGCTATGGTTAACTACTTGGCTTTATTAGGTTGGGGCGATGGTACTGAGAATGAGTTTTTTACCCTCGAACAACTTGTGGAAAAGTTTTCAATTAGCCGTGTAAACAAAAGTGGTGCTGTTTTTGATTCTACTAAGTTGAGGTGGATGAATGGTCAGCATTTGAGAGCCCTTCCATCTGAAGAATTGACCAAGCTTATTGGTGAGCGCTGGAAGAGCACGGGTATCCTGACAGAATCAGAAGGACCATTTATTGAGGAATCAGTTCAGCTGCTCAAAGATGCAATTGACTTGGTAACTGATGCCGACAAAGCACTGTCAAACCTTCTGTCCTATCCTCTACACACTACTCTGACAAGTTCCGAAGCTAAGCCTCTTGTCGAGGATAAGCTTTCTGAATTTTCAGCGAGCCTCATAACTGCATACGATAGTGGGGAAATCCTTAATGCACTTGAAGAGGGCCCTTCTGGCTGGCAGAAATGGGTGAAAAGTTTTGGAAAATCATTGAAGCGAAAGGGAAAATCACTTTTCATGCCACTCCGGTTGTTGCTCACGGGGAAAATTCATGGCCCTGATATGGGGGCTAGCATCGTCTTACTTCATAAAGCAAGATCGTCCGGTGTCGTTGCTCCTCAAGCTGGGTTTGTGCCACTGAATGACAGGTTTGAAATTCTTAGACAAATTGACTGGGATGCAGTGACCAAGGATAGCCCTCTAGTAGAGTCACCTGCACCTGCGGCTGTTCCCAACTGA 1722 44.77 MATIAGTPWVRIKAFPILNPPILHRSNFYFGVRCIPKFRRSFSVSASVDKVDGGDVRVRFAPSPTGNLHVGGARTALFNYLFARANGGKFVLRIEDTDLERSTRQSEEAVLRDLSWLGLDWDEGPNVGGEYGPYRQSERNALYKQYAEKLLESGQVYRCFCSNEELEKMKEVAKLKQLPPVYMGKWASATNEEVREELEKGTPYTFRFRVPQEGSLKINDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPEAMVNYLALLGWGDGTENEFFTLEQLVEKFSISRVNKSGAVFDSTKLRWMNGQHLRALPSEELTKLIGERWKSTGILTESEGPFIEESVQLLKDAIDLVTDADKALSNLLSYPLHTTLTSSEAKPLVEDKLSEFSASLITAYDSGEILNALEEGPSGWQKWVKSFGKSLKRKGKSLFMPLRLLLTGKIHGPDMGASIVLLHKARSSGVVAPQAGFVPLNDRFEILRQIDWDAVTKDSPLVESPAPAAVPN* 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1689375 1696853 + CsaV3_7G002150.1 Csa07g00215 535778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00215 573 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 366 528 IPR008925 GO:0000049
Csa07g00215 573 CDD GluRS_core 56 379 IPR033910 GO:0006424|GO:0008270
Csa07g00215 573 Pfam tRNA synthetases class I (E and Q), catalytic domain 56 372 IPR020058 GO:0004812|GO:0005524|GO:0043039
Csa07g00215 573 TIGRFAM gltX_bact: glutamate--tRNA ligase 56 528 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Csa07g00215 573 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 62 73 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Csa07g00215 573 PANTHER GLUTAMATE--TRNA LIGASE 46 550 - -
Csa07g00215 573 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 46 550 - -
Csa07g00215 573 SUPERFAMILY Nucleotidylyl transferase 56 365 - -
Csa07g00215 573 Gene3D HUPs 48 380 IPR014729 -
Csa07g00215 573 Hamap Glutamate--tRNA ligase [gltX]. 55 539 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Csa07g00215 573 Gene3D - 440 530 IPR020751 -
Csa07g00215 573 Pfam Anticodon binding domain 402 528 IPR045462 -
Csa07g00215 573 PRINTS Glutamyl-tRNA synthetase signature 59 71 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Csa07g00215 573 PRINTS Glutamyl-tRNA synthetase signature 73 84 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Csa07g00215 573 PRINTS Glutamyl-tRNA synthetase signature 88 101 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Csa07g00215 573 PRINTS Glutamyl-tRNA synthetase signature 245 255 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Csa07g00215 573 PRINTS Glutamyl-tRNA synthetase signature 261 269 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00215 K01885 EARS, gltX; glutamyl-tRNA synthetase [EC:6.1.1.17] - csv:101212759 1144.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01412 Csa-Chr2:13487469 Csa07g00215 Csa-Chr7:1689375 1.40E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g314 . Blo15g00412 Bda06g00451 . Bpe07g00684 . . Bma12g00888 Cmo19g00835 . . . . . Sed05g2139 . Cpe15g00657 Bhi05g01543 Tan02g0541 Cmetu11g0170 . Hepe02g0346 . . Cla02g00327 Cam02g0336 Cec02g0336 Cco02g0340 Clacu02g0327 Cmu02g0325 Cre02g0658 . . . Cone10ag1201 . Csa07g00215 . . . . . . . . . . . . . . Cma19g00816 . Car19g00634 . . . . . . . . . . . . . . . . Lsi11g01310 . Chy01g00566 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010497 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00215 Csa_Chr07 FPKM 17.204355 18.888865 21.006536 21.234524 21.097439 20.603695 22.596483 29.285854 27.800402 27.260122