Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00216 ATGTCGGTTTCTCAAACCCTAGGTGGCACCTCCAGATGCGGCCGTGCCATCGGTCCTTCTCTCGATAAGATTGTCAAGAACGCAGCCTGGCGTAAGCATTCTCATCTTGTTTCTTCTTGTAAATCTGTTCTTGATAAGCTTGATTCTATTGCGGAGGCTGTTCCTCCTGATCCAACCTCCCCACTCGCTGGACTTTCACCTGCTGATGCGGACTTTGTGCTCCAACCTCTCCTTTTGGCTCTTGATGCTGCCTATGTCAAGGTTGCTGAGCCTGCGCTCGAGTGCGTTTTCAAATTGTTCTCCCGCGGTCTTTTCCGTGGGGAGATCGAGCGGCCCGATGGTGATGCGAATTCTAATGCTAGTTCCATTGTGTATAAGATTGTCGAGTCTGTTTGTAAGTCGGGAGGTCTTGGTGATGAAGGAATTGAGCTCACTGTTTTAAGAGTGTTGCTCTCTGCGGTTCGATGCCCTTGTGTTTTGATCCGGGGGGATTGTTTGGTTAATGTTGTTCGGACTTGTTATAATGTGTATCTCGGTGGGTTAAGTGGTACGAATCAGATCTGTGCAAAATCTGTTTTAGGTCAAGTAATGGTCATTGTTTTTAGTAGAGTGGAGGAGGACTCCATGGATGCTCCGATGAGGATAATTTCTGTGAGTGAATTATTGGAATTTACCGATAAGAACTTGAATGAAGGAAATTCTATATATTTTTGCCAGAACTTTATTAATGAGGTAATGGATGCCAGCGAAGGGATTGCGGACAAGAAATTGTACGAGTTTTCGGCAAAATTGCAGAATGGCCATGCTTCACCATTGAAAGTTGACAATAAAGGTGAATCTGATATAGGAGAAACGGAAGATGTTTGTAGTAAGATTAGGGAGGATGGATTCCATTTGTTTAAGAATTTGTGTAAATTGTCAATGAAATTCTCATCACCGGAGCACCCAGATGATCAGATCCTCATAAGAGGGAAAATATTGTCTCTGGAACTGTTAAAGGTGGTTATGGACAATGCAGGTCCAGTTTGGCGCTCAAACGAGAGGTTTCTCAATGCTATCAAGCAATTTCTTTGCTTATCATTATTGAAAAACAGTGCTCTCTCGGCGATGGCCATCTTCCAGCTGCAATGTTGTATTTTTACTAGCTTGTTGACAAAATTTAGATCAGGATTAAAAGCAGAAGTTGGCATCTTCTTTCCCATGCTTGTCCTCCGAGTGCTTGAGAATGTACTTCAGCCTAGTTTCTTGCAGAAGATGACCGTGCTCAATTTGTTGGATAAGATATCTCAAGATTCACAGACTATGGTGGACATTTTTGTCAACTATGATTGTGATGTTGATTCTCCAAACATTTTTGAGAGGATTGTGAATGGCCTTTTGAAAACTGCTCTTGGACCGCCTTCTGGTTCAACCACGACTTTGTCTCCAGCACAGGATATTACATTTAGGCTTGAATCTGTTAAGTGTTTAGTAAGCATCATTAAATCAATGGGAACTTGGATGGACCAACAAATGAAGCTAGACGATACAAATATTCTCAAAACTTCTGAGAGCGATGCATCACCTGAGAATCAAATAAGTGGGGAAGAAACAGCTGCTGTTGACTCTGAGCTCCAATCAGATGGAAATTCTGAGTTCTCAGATGCTGCTACCCTTGAGCAAAGGAGAGCTTACAAAATCGAACTCCAGAAAGGTATTTCGCTGTTCAATAGGAAACCTTCCAGGGGCATTGAGTTTCTGATCAGCACAAAAAAAGTTGGTGGTTCTCCTGAAGAGGTGGCTTCTTTTCTCAAGAATACAAACGGCCTGAATGAAACAGTCATTGGTGATTATTTGGGTGAAAGGGAGGAATTCCCTTTGAAAGTTATGCATGCTTATGTTGATTCCTTTAATTTTAAAGTGATGGACTTTGGCGAAGCAATAAGGTTTTTCCTGCGGGGCTTCAGGTTACCAGGAGAAGCACAAAAGATTGATCGGATCATGGAGAAGTTTGCCGAGCGGTACTGTAAATGTAACCCAGATTCATTTACGAGTGCAGATACTGCTTATGTTCTTGCTTATTCTGTAATCATGCTGAACACAGATGCTCATAATAACATGGTGAAAGAAAAGATGACAAAAGCTGATTTTATTCGGAACAATCGAGGAATTGATGACGGCAAGGACTTACCCGACGAGTATCTTGGTGCTCTTTATGATCAGATTGTTAGGAATGAAATTAAGATGAATTCTGATTCTTCTGCTTCACAAAGTAAGCAGGCAACTAGCATCAACAAACTTTTGGGCTTGGATGGTATACTCAATTTAGTTTCTTGGAAGCAGACAGAAGAAAAAGCTGTTGGTGCAAATGGGCTTCTTATAAGGCACATACAGGAGCAGTTTAAGGCGAAATCTGGAAAATCTGAATCTGTTTATCACGCTGTGACGGATGTAACAATATTGAGGTTTATGGTGGAAGTTTTCTGGGGTCCTATGTTGGCGGCATTCAGTGTGACTCTTGACCAAAGTGATGATAAGCTTGCTACTTCTCAATGCTTACTAGGCTTTCGGTATGCTGTGCATGTTACAGCTGTCATGGGCTTGCAGACTCAACGGGACGCATTTGTGACATCCATGGCTAAGTTTACCTATCTTCATTGTGCTGCAGATATGAAACAAAAAAACGTTGAAGCTGTGAAGGCTATAATATCGATTGCCATAGAGGATGGTGATTTTCTTCAAGAGGCATGGGAGCACATATTTACATGTCTCTCTAGAATTGAAAACTTACAATTATTGGGAGAGGGTGCACCATCTGATGCATCGTTTTTGACCACATCAAATATTGAAACTGAAGAAAAAGCTCTGAAGACGGCAGGTTTATCATCTCTGAAGAGAAAAGGAAGTCTCCAAAATCCAGCTGTTATGGCTGTTGTTCGTGGAGGTTCATACGACAGCACCTCTCTCGGAGCAAATTCTTCTCCAGGACCAGTGACTCCTGATCAGATTAACCACCTAATTTCAAACTTGCATTTGCTCCATCAAATAGGCAATTTTGAGTTGAACCACGTATTTGCTCATAGTCAAAGCTTGAACAGTGAAGCGATAGTAGCATTCGTGAAGGCTCTTTGCAAAGTTGCTATTGCAGAGTTGCAGTCTCCTACAGACCCACGTGTGTTCAGCCTCACTAAATTAGTTGAAGTGGCGCATTACAACATGAACCGTATCAGATTGGTGTGGTCTCGCATGTGGAATGTTCTTTCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTTTCGGTTGCAATATTTGTGATGGACTCTTTGAGGCAGCTCGCAATGAAATTTTTGGAGCGTGAGGAGCTTGCAAATTATAACTTCCAGAATGAATTTCTGCGACCCTTCGTAATAGTTATGCAGAAAAGCGGCTCCACAGAAATTAGGGAATTGATAGTTCGATGCATTTCGCAGATGGTTCTCAGTCGGGTCAATAATGTGAAATCTGGATGGAAAAGTGTTTTTATGGTTTTCACTGCTGCTGCTGCTGACGAGCGGAAGAATATTGTCTTATTGGCTTTTGAAACCATGGAAAAAATAGTTCGAGAATATTTTCCTTACATAACTGAGACCGAAACTACAACATTTACCGATTGTGTCCGATGTCTGATTACTTTTACAAATAGCAGATTTAATAGTGATGTCAGTCTCAATGCCATTGCGTTCCTTCGCTTTTGTGCTGTAAAACTTGCAGAAGGGGGACTCGTTTGCTATGAGATGGCTGGAGATAATGTTTCATCCAATTCTCCAGATGAACCCACTCCCACGCCCACTCCCACGCCCACTGACAAGGATGATTATGCTTCCTATTGGGTTCCTTTACTTGCAGGGCTATCAAAGTTAACATCTGATCCTCGATCACCCATCAGAAAAAGTTCTTTGGAAGTACTTTTTAATATCCTCAAAGATCATGGTCATCTTTTCTCACGTCAATTCTGGGTTGGTGTTATCAATTCCGTAGTCTTCCCCATATTCAATTCTTTACATGACAAGAAAGAAGTGGACATGGATGAAAACGACAAATACACAGAAGGAAGTACATGGGATTCTGATACCTGTGCAGTGGCAGCAGATTGTTTAGTAGATCTGTTTGTTAGTTTTTTCAATGTAATAAGATCTCAACTACCCGGCGTGGTGGCGATTCTTACGGGATTCATTAGGAGTCCAATCCAAGGTCCTGCCAGCACTGGTGTTGCTGCATTAATGCGTTTGGCAGGCGACTTGGCTAACAGGCTTACCGAAAACGAGTGGAGAGAGATCTTTCTTGCTTTGAAGGAAGCTGCCACATTAACCGTGCCTGGATTTCTCAAGGTCCTGAGGACCATGGATGACATCAATGTTCCCGGGATCTCTCAATCTTGTTATGACGTGGATGCAGCTTCAGATCAAGGTTTGTCAACCGATGGTTTTGATGATGATGATCTGCAAACGGCCTCCTATATCGTTTCGAGAATGAAGAGTCATATCTCAATGCAACTCCTCGTCTTACAGGTCATAACTGATTTGTACAAGAACCATACCCAACCTTTCTCTCAAGGCAACATTTCCATCATTCTTGAGATCTTTTCTTCCATTTCCACACATGCCCAGAAACTTAATTCTGACACAGTCCTTCAAAAGAAGCTACAGAAAGCTTGCTCCATCCTAGAGATATCTGACCCACCCATGGTTCACTTCGAAAACGAGTCTTACCAGAGCTACCTCAACTTTCTCCAGAATATGCTAGCCAATAACCCGTTGCTCTCTAATTCAACTCTTATTGAATCCGAACTTGTCACTGTCTGTGCACAAATTTTGCATATCTACTTGAAGTGCACCGGGACACAGAATGAGCTGAAAGAAACCAACCAGCCTGTACAACATTGGATCCTTCCGTTGGGTGCAGCAAGGAAGGAGGAACTGGCTGCTCGAACATCTCTAGTTGTCTCAGCACTGCGGGTTCTATGCGGGTTTGAAAAGGACCTATTTAAAAGGTATGTTCCACAGCTTTTTCCATTGTTGGTAGAGCTTGTAAGGAGTGAACATAGCTCTGGAGAAGTTCAGGTTGTTTTGAGCATCATATTTCAATCATGTATAGGGCCAATAATTATGCAATAA 5136 42.19 MSVSQTLGGTSRCGRAIGPSLDKIVKNAAWRKHSHLVSSCKSVLDKLDSIAEAVPPDPTSPLAGLSPADADFVLQPLLLALDAAYVKVAEPALECVFKLFSRGLFRGEIERPDGDANSNASSIVYKIVESVCKSGGLGDEGIELTVLRVLLSAVRCPCVLIRGDCLVNVVRTCYNVYLGGLSGTNQICAKSVLGQVMVIVFSRVEEDSMDAPMRIISVSELLEFTDKNLNEGNSIYFCQNFINEVMDASEGIADKKLYEFSAKLQNGHASPLKVDNKGESDIGETEDVCSKIREDGFHLFKNLCKLSMKFSSPEHPDDQILIRGKILSLELLKVVMDNAGPVWRSNERFLNAIKQFLCLSLLKNSALSAMAIFQLQCCIFTSLLTKFRSGLKAEVGIFFPMLVLRVLENVLQPSFLQKMTVLNLLDKISQDSQTMVDIFVNYDCDVDSPNIFERIVNGLLKTALGPPSGSTTTLSPAQDITFRLESVKCLVSIIKSMGTWMDQQMKLDDTNILKTSESDASPENQISGEETAAVDSELQSDGNSEFSDAATLEQRRAYKIELQKGISLFNRKPSRGIEFLISTKKVGGSPEEVASFLKNTNGLNETVIGDYLGEREEFPLKVMHAYVDSFNFKVMDFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPDSFTSADTAYVLAYSVIMLNTDAHNNMVKEKMTKADFIRNNRGIDDGKDLPDEYLGALYDQIVRNEIKMNSDSSASQSKQATSINKLLGLDGILNLVSWKQTEEKAVGANGLLIRHIQEQFKAKSGKSESVYHAVTDVTILRFMVEVFWGPMLAAFSVTLDQSDDKLATSQCLLGFRYAVHVTAVMGLQTQRDAFVTSMAKFTYLHCAADMKQKNVEAVKAIISIAIEDGDFLQEAWEHIFTCLSRIENLQLLGEGAPSDASFLTTSNIETEEKALKTAGLSSLKRKGSLQNPAVMAVVRGGSYDSTSLGANSSPGPVTPDQINHLISNLHLLHQIGNFELNHVFAHSQSLNSEAIVAFVKALCKVAIAELQSPTDPRVFSLTKLVEVAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSGSTEIRELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCYEMAGDNVSSNSPDEPTPTPTPTPTDKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFNILKDHGHLFSRQFWVGVINSVVFPIFNSLHDKKEVDMDENDKYTEGSTWDSDTCAVAADCLVDLFVSFFNVIRSQLPGVVAILTGFIRSPIQGPASTGVAALMRLAGDLANRLTENEWREIFLALKEAATLTVPGFLKVLRTMDDINVPGISQSCYDVDAASDQGLSTDGFDDDDLQTASYIVSRMKSHISMQLLVLQVITDLYKNHTQPFSQGNISIILEIFSSISTHAQKLNSDTVLQKKLQKACSILEISDPPMVHFENESYQSYLNFLQNMLANNPLLSNSTLIESELVTVCAQILHIYLKCTGTQNELKETNQPVQHWILPLGAARKEELAARTSLVVSALRVLCGFEKDLFKRYVPQLFPLLVELVRSEHSSGEVQVVLSIIFQSCIGPIIMQ* 1712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1698802 1709189 + CsaV3_7G002160.1 Csa07g00216 535779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00216 1711 PANTHER BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 4 9 1704 - -
Csa07g00216 1711 ProSiteProfiles SEC7 domain profile. 551 738 IPR000904 GO:0005085|GO:0032012
Csa07g00216 1711 Pfam Domain of unknown function (DUF1981) 1109 1191 IPR015403 -
Csa07g00216 1711 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 294 451 IPR032691 -
Csa07g00216 1711 Gene3D - 543 632 - -
Csa07g00216 1711 Pfam C-terminal region of Mon2 protein 1275 1343 IPR032817 -
Csa07g00216 1711 SMART sec7_5 555 740 IPR000904 GO:0005085|GO:0032012
Csa07g00216 1711 MobiDBLite consensus disorder prediction 516 546 - -
Csa07g00216 1711 Pfam Sec7 domain 559 740 IPR000904 GO:0005085|GO:0032012
Csa07g00216 1711 Pfam Dimerisation and cyclophilin-binding domain of Mon2 16 207 IPR032629 -
Csa07g00216 1711 CDD Sec7 558 740 IPR000904 GO:0005085|GO:0032012
Csa07g00216 1711 Pfam BIG2 C-terminal domain 1504 1702 IPR046455 -
Csa07g00216 1711 MobiDBLite consensus disorder prediction 1258 1278 - -
Csa07g00216 1711 Gene3D - 1099 1325 IPR011989 -
Csa07g00216 1711 SUPERFAMILY ARM repeat 903 1703 IPR016024 -
Csa07g00216 1711 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 9 1704 - -
Csa07g00216 1711 Gene3D - 633 753 IPR023394 -
Csa07g00216 1711 SUPERFAMILY Sec7 domain 555 746 IPR035999 GO:0005085|GO:0032012
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00216 K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein - csv:101212521 3306.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00961 Csa-Chr3:7836641 Csa07g00216 Csa-Chr7:1698802 0 dispersed
Csa03g01002 Csa-Chr3:8090663 Csa07g00216 Csa-Chr7:1698802 0 dispersed
Csa05g00734 Csa-Chr5:5023282 Csa07g00216 Csa-Chr7:1698802 5.09E-85 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00216 Csa_Chr07 FPKM 12.029865 15.379023 0.72297 0.921579 0.848762 0.544927 0.504381 4.018053 3.512976 3.771198