Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00219 ATGTCTGATTTGAACTCCGCCGTCCACGGCGCCTCCTCCCGCAACGCCAATCAATTTCTCGGTTCAGACCTCCAACTTCAAAACTTCTCACAAACCCATCTTCCCGATCCCAATTCTGCCGATTCAACCACTCCCACCACCGGCGGTTCATCCTCGCGCCGCCCTCGTGGCCGCCCCGCCGGCTCCAAGAACAAGCCAAAACCGCCGGTGATCGTAACACGTGACAGCCCCAACTCTCTGAGGTCGCACGTGCTAGAGGTTTCCCCAGGCTCCGATGTGGTTGAATCCATCTCGACTTACGTCACCCGCCGCCGCTACGGCGTTTGCATTCTCGGCGGCACTGGCGCCGTCACCAACGTCAACTTGCGTCAGCCGATGTCTCCGTCGGGTTCTGTTATGACTCTTCATGGAACATTTGAGATTGTGTCTCTGACTGGCACGGCGTTGCCGCCTTCGGGTGCTGGAGGGCTAACGATTTATTTGGCCGACAGGCAACGGCAAGGACATGTCGTCGGAGGAAGCGTCGTCGGGCCATTGAGGGCATCGAGTCCAGTTACACTGATGGTGGCATCGTTTACGAATGCAGTGTATGATCGGCTACCGGTGGAGGAGGCAGAGCCGCCGGTACAAGCTCAGGCATCGGCGTCGCCATCTTCAGATATTACTGGTGGAGGTGGCCAACTTAGGGGTATCGAAAGCTTCAACCTTCGTGACGATGGTTACGGTTGGAACAACAATGCATCAAGACCTCCGACAACACTCTGA 765 56.99 MSDLNSAVHGASSRNANQFLGSDLQLQNFSQTHLPDPNSADSTTPTTGGSSSRRPRGRPAGSKNKPKPPVIVTRDSPNSLRSHVLEVSPGSDVVESISTYVTRRRYGVCILGGTGAVTNVNLRQPMSPSGSVMTLHGTFEIVSLTGTALPPSGAGGLTIYLADRQRQGHVVGGSVVGPLRASSPVTLMVASFTNAVYDRLPVEEAEPPVQAQASASPSSDITGGGGQLRGIESFNLRDDGYGWNNNASRPPTTL* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1744518 1746166 + CsaV3_7G002190.1 Csa07g00219 535782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00219 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 208 - -
Csa07g00219 254 MobiDBLite consensus disorder prediction 207 254 - -
Csa07g00219 254 CDD DUF296 81 167 IPR005175 -
Csa07g00219 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 25 10 231 - -
Csa07g00219 254 MobiDBLite consensus disorder prediction 239 254 - -
Csa07g00219 254 MobiDBLite consensus disorder prediction 16 53 - -
Csa07g00219 254 Gene3D - 80 210 - -
Csa07g00219 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 194 IPR005175 -
Csa07g00219 254 ProSiteProfiles PPC domain profile profile. 77 213 IPR005175 -
Csa07g00219 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 10 231 IPR014476 GO:0003680
Csa07g00219 254 MobiDBLite consensus disorder prediction 16 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00219 Csa-Chr7:1744518 Csa06g00611 Csa-Chr6:5164542 1.05E-56 dispersed
Csa07g00219 Csa-Chr7:1744518 Csa03g01009 Csa-Chr3:8151266 2.55E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00219 - - csv:101213839 462.611