Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00221 ATGGATAATGAGGTGATTGAATTTGATATTGGATTGGGAGGTGGGAGTGGGAGGGAGGGAGATGACTATTCTATGGGTATGGTACACCATTCCATTGAGGATGAGGAAATGGTTGATAGCCCTCCTCTCAGCAGTCTTGGTGGTGGTGCTGGCAGTGGTGAAATATATCTTCCTGAGGGTGATCTTTTGGATCTTGAACCTTATGAAAGAATGGAATTCGAGTCTGAAGAAGCTGCCAAGGCTTTCTACAATTCATATGCTCGACGTGTTGGGTTTAGTACTCGTGTCAGCTCCTCCCGTCGGTCTAGGCGTGATGGAGCGATTATACAAAGACAATTTGTTTGTGCCAAAGAGGGTTTTAGGAATTTGAATGAGAAACGAACTAAAGACAGAGAAATTAAGCGTCCTCGGACGATTACAAGAGTGGGTTGCAAAGCATCCTTGTCTGTAAAAATGCACGATTCTGGAAAATGGGTTGTCTCTGGATTTGTTAGAGAGCATAATCATGAGTTAGTTCCTCCTGATCAGGTGCACTGCCTGCGGTCTCATAGGCAAATATCAGGTCCAGCAAAAACCTTAATTGATACTTTACAGGCTGCTGGGATGGGTCCTCGTAGAATTATGTCAGCATTGATAAAGGAGTATGGAGGAATCAGTAAAGTTGGATTTACAGAGGTGGATTGTCGCAATTATATGAGGAATAATCGCCAAAGGAGCTTAGAAGGAGACATTCAACTGCTTTTGGATTACTTAAGGCAAATGCATTCTGAAAACCCTAACTTCTTCTATGCTGTGCAAGGTGAGGAGGATCAGTGCGTTGGAAATGTCTTTTGGGCTGACCCAAAAGCTCGGATGAACTATACTTATTTTGGTGATACTGTTACATTTGACACTACCTATAGGTCAAACAGATATCGTCTGCCCTTTGCTCCATTTACTGGGGTGAATCACCATGGACAGCCTGTTTTATTTGGTTGTGCTTTTCTAATAAATGAATCTGAAGCATCGTTTAATTGGCTATTTAGAACATGGCTTTTGGCAATGTCTGGTCGTCCACCTGTGTCAATTACTACTGATCACGATTCAGTAATACAGTCAGCCATTACACAAGTTTTCCCTGAGACCCGTCACCGTTTCTGCAAATGGCATATTTTCAAGAAATGCCAGGAGATGCTGTCTCATGTGTTTCTTAAACACCCAAGCTTTGAAGCTGACTTCCACAAATGTGTAAACTTGACTGACTCTATCGAGGAATTTGAGTCCTGCTGGCTTTCACTTGTTGACAGATATGATCTCAGGGATCATGAATGGCTTCAGACAGTTTACTCTGCTCGGAGGCAGTGGGTTCCAGTGTATTTGCGGGATACGTTTTTTGCTGAAATGTCTATTACACAGCGAAGTGATAGCATGAATTCATATTTTGATGGGTATGTGAATGCTTCAACCAATTTGAGTCAGTTTTTTAAACTGTATGAAAAAGCCTTAGAGAGTCGGAATGAGAAAGAAGTGAAAGCAGATTATGATACAATGAACACTTCCCCTGTTCTAAAGACACCATCTCCAATGGAAAAACAAGTTTCTGAGCTTTACACCAGGAAGCTATTCTCGAGGTTCCAAGAGGAGTTAGTTGGGACGTTAACTTTTATGGCATCAAAAGCTGATGATGATGGAGAAATTATAACATATCAAGTGGCCAAATATGGAGAGGATCATAAAGCACACTATGTGAAATTTAATGTTTTGGAGATGAGAGCAAGTTGTAGTTGCCAGATGTTTGAGTTCTCAGGTCTTTTGTGCAGACATATCTTGGCTGTCTTCAGAGTGACCAATATTCTTACACTTCCATCTTATTACATATTGAAACGATGGACAAGAAATGCAAAAAGTAATGTGGTATTGGAGGATCATGTGAATGATATCTACAACAACTATCTTGAATCCCATACTGTGAGATACAATACCTTACGCCATGAGGCTTTTAAATTTATAGAGGAAGGAGCAAAGAGTGTGGATATGTATAATGTGGTTAAAGATGCCCTTCAGGAGGCTGCTAAAAGGGTTGCTCAAACAACAAGGAATGATGGCAAAATTTCTATAATGAATGGGCGAATTAAAGTGGACCCTGTAAATGTCAAAAGCTATGCGAATCATAGTAGTAGCAGGGATCATGATGAGAACTTGAGTAAAAATATGTCTGAGGATGAGTTGGACAAAAAGATCAATGAACTTACCAATGAATTGGAGTGTGCAAATCGCAAGTGTGAAGTTTATCGGTCTAACCTTTTTTCAGTGCTGAAAGACATTGAGGACCACAAGTTGCAATTGTCTATTAAAGTGCAGAACATTAAAATTAGTATGAAAGACAGCATTTGA 2373 40.41 MDNEVIEFDIGLGGGSGREGDDYSMGMVHHSIEDEEMVDSPPLSSLGGGAGSGEIYLPEGDLLDLEPYERMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEDQCVGNVFWADPKARMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFNWLFRTWLLAMSGRPPVSITTDHDSVIQSAITQVFPETRHRFCKWHIFKKCQEMLSHVFLKHPSFEADFHKCVNLTDSIEEFESCWLSLVDRYDLRDHEWLQTVYSARRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTSPVLKTPSPMEKQVSELYTRKLFSRFQEELVGTLTFMASKADDDGEIITYQVAKYGEDHKAHYVKFNVLEMRASCSCQMFEFSGLLCRHILAVFRVTNILTLPSYYILKRWTRNAKSNVVLEDHVNDIYNNYLESHTVRYNTLRHEAFKFIEEGAKSVDMYNVVKDALQEAAKRVAQTTRNDGKISIMNGRIKVDPVNVKSYANHSSSRDHDENLSKNMSEDELDKKINELTNELECANRKCEVYRSNLFSVLKDIEDHKLQLSIKVQNIKISMKDSI* 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1754310 1760052 + CsaV3_7G002210.1 Csa07g00221 535784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00221 790 SMART 26again6 585 612 IPR006564 GO:0008270
Csa07g00221 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 40 763 - -
Csa07g00221 790 ProSiteProfiles Zinc finger SWIM-type profile. 578 610 IPR007527 GO:0008270
Csa07g00221 790 Pfam MULE transposase domain 294 387 IPR018289 -
Csa07g00221 790 Pfam FAR1 DNA-binding domain 82 173 IPR004330 -
Csa07g00221 790 Coils Coil 733 760 - -
Csa07g00221 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 763 IPR031052 GO:0006355
Csa07g00221 790 Pfam SWIM zinc finger 562 608 IPR007527 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00221 - - - csv:101218471 1564.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00731 Csa-Chr4:4973487 Csa07g00221 Csa-Chr7:1754310 5.05E-166 dispersed
Csa06g03919 Csa-Chr6:30971693 Csa07g00221 Csa-Chr7:1754310 1.47E-142 dispersed
Csa07g00221 Csa-Chr7:1754310 Csa07g02140 Csa-Chr7:20436138 1.28E-127 dispersed
Csa01g03091 Csa-Chr1:26879471 Csa07g00221 Csa-Chr7:1754310 0 transposed
Csa03g01386 Csa-Chr3:10392246 Csa07g00221 Csa-Chr7:1754310 1.76E-15 transposed
Csa03g03609 Csa-Chr3:32174695 Csa07g00221 Csa-Chr7:1754310 2.27E-06 transposed
Csa04g00338 Csa-Chr4:2056681 Csa07g00221 Csa-Chr7:1754310 1.17E-22 transposed
Csa04g00376 Csa-Chr4:2290171 Csa07g00221 Csa-Chr7:1754310 1.37E-25 transposed
Csa05g00612 Csa-Chr5:4016878 Csa07g00221 Csa-Chr7:1754310 4.25E-109 transposed
Csa05g01078 Csa-Chr5:10880232 Csa07g00221 Csa-Chr7:1754310 1.92E-83 transposed
Csa06g03445 Csa-Chr6:28368052 Csa07g00221 Csa-Chr7:1754310 1.13E-69 transposed
Csa07g01604 Csa-Chr7:16558935 Csa07g00221 Csa-Chr7:1754310 9.57E-06 transposed
Csa06g00998 Csa-Chr6:8087498 Csa07g00221 Csa-Chr7:1754310 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g319 . . . . . . . . Cmo19g00838 Cmo11g01806 . . . . Sed01g0791 . . Bhi05g01538 Tan02g0536 Cmetu02g1725 . Hepe02g0341 . . . . . . . . . . . . . . Csa07g00221 . . . . . . . . . . . . . Cma11g01315 Cma19g00822 . Car19g00638 . . . . . . . . . . . . . . . . . . Chy01g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32244 PF10551 MULE 4.50E-29 CL0219 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00221 Csa_Chr07 FPKM 15.026807 13.813709 114.535599 108.753532 180.632416 175.258606 175.650864 43.329967 48.890991 42.235516