Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00224 ATGGAAAGTAGCGCCAGTCGAAATGGTAATTGCATGCTGTGGTTCTTCAGGGATAAAGGTTTTGATGATAGAAGTATTGATAAGATGTTTAGAAAGTGTAGGCGTTTAGAAGATATGCAGAATGAAAGAGCTTCTGAAAACTGGGAATATTTGGAAAGAATTGGGATTCAAAAGAGGAAACTCCCTTCTGTTGTTTCCAAATGCCCTAAGATTTTAGCTCTTGGTCTTCAAGAGAAACTCGTTCCCATGGTTGAGTGCCTTGCAACACTCAGCACCAAGCCTCATGAAATAGCTGCAGCTATTGCTAAATTTCCCGGTATTCTTTCCTATAGTGTTGAAGAGAAGCTATGCCCACTTTTGGCGTTCTTTCAAGCATTGGGTGTCCCTGAAAAGCAACTTGGAAAGATGATTCTACTCAACCCGAGGCTTATTAGTTACAGCATTGAATCGAAACTCGTTGAAACTGTAGATTTTCTTGCTGGAGTTGGGCTAACGAAGGAGGGGGTGATTGGAAAAGTTCTTGCCAAAAATCCATTTCTCATGGGTTATAGTGTTGATAAAAGGCTCCGCCCGACTGTGGAGTTTCTGAAATCAATCGGTCTAAACAAGATGGATCTTCAAGCAGTTGCACTGAAATTTCCAGACATTTTGTGTAGGGACGTGGACAAAGTTTTGAGATATAATTTAGATTATCTAAGGAGCCGTGGGTTTAAAGATGGAGAAATAGTGTCTTTGGTGACTGGTTATCCTCCTGTTTTGATCAAGAGCATTCAACATTCTTTAGAACCTCGGATCAGATTTTTGGTCGAAATAATGGGAAGAAAACTTGAGGAAGTTGCTGAATATCCTGACTTTTTTAAGCATGGTTTGAAGAAAAAACTTGAGCTGCGGCATAGATTGTTGAAAGAGAAGAACGTTGACTTTGCCTTGAGTGAATTGTTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGGGTTTGTTATGA 987 39.61 MESSASRNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDMQNERASENWEYLERIGIQKRKLPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFLMGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRYNLDYLRSRGFKDGEIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKNVDFALSELLECNQKKFMMKMGLL* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1770382 1775615 - CsaV3_7G002240.1 Csa07g00224 535787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00224 328 Gene3D Transcription termination factor 3, mitochondrial 95 326 IPR038538 -
Csa07g00224 328 PANTHER CGI-12 PROTEIN-RELATED 11 327 IPR003690 GO:0003690|GO:0006355
Csa07g00224 328 Pfam mTERF 12 169 IPR003690 GO:0003690|GO:0006355
Csa07g00224 328 Pfam mTERF 119 321 IPR003690 GO:0003690|GO:0006355
Csa07g00224 328 SMART mt_12 243 275 IPR003690 GO:0003690|GO:0006355
Csa07g00224 328 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Csa07g00224 328 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Csa07g00224 328 SMART mt_12 171 202 IPR003690 GO:0003690|GO:0006355
Csa07g00224 328 SMART mt_12 62 93 IPR003690 GO:0003690|GO:0006355
Csa07g00224 328 SMART mt_12 27 57 IPR003690 GO:0003690|GO:0006355
Csa07g00224 328 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Csa07g00224 328 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Csa07g00224 328 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL 11 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00224 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101218706 639.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02534 Csa-Chr1:22328566 Csa07g00224 Csa-Chr7:1770382 2.28E-07 transposed
Csa01g02578 Csa-Chr1:22693192 Csa07g00224 Csa-Chr7:1770382 2.64E-13 transposed
Csa03g04005 Csa-Chr3:35009471 Csa07g00224 Csa-Chr7:1770382 1.20E-10 transposed
Csa05g01683 Csa-Chr5:20031519 Csa07g00224 Csa-Chr7:1770382 3.27E-06 transposed
Csa05g02466 Csa-Chr5:26462281 Csa07g00224 Csa-Chr7:1770382 2.40E-07 transposed
Csa06g02715 Csa-Chr6:23785937 Csa07g00224 Csa-Chr7:1770382 5.54E-21 transposed
Csa06g02871 Csa-Chr6:24990355 Csa07g00224 Csa-Chr7:1770382 5.15E-15 transposed
Csa07g00824 Csa-Chr7:5807578 Csa07g00224 Csa-Chr7:1770382 5.95E-11 transposed
Csa07g00954 Csa-Chr7:8385319 Csa07g00224 Csa-Chr7:1770382 1.18E-23 transposed
Csa07g01270 Csa-Chr7:12630125 Csa07g00224 Csa-Chr7:1770382 1.53E-18 transposed
Csa06g00996 Csa-Chr6:8074942 Csa07g00224 Csa-Chr7:1770382 1.00E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g322 . . . . . . . . Cmo19g00843 . . . . . Sed05g2133 . Cpe15g00664 Bhi05g01534 Tan02g0531 Cmetu11g0650 Lac12g0430 Hepe02g0338 . . Cla02g00320 Cam02g0328 Cec02g0328 Cco02g0332 Clacu02g0318 Cmu02g0317 Cre02g0650 . . Cone3ag1260 Cone10ag1198 . Csa07g00224 . . . . . . . . . . . . . . Cma19g00826 . Car19g00641 . . . . . . . . . Cla02g01049 Cam02g1120 Cec02g1125 Cco02g1158 Clacu02g1106 Cmu02g1066 Cre02g1374 Lsi11g01318 . Chy01g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003040 0 1 1 1 1 2 1 3 2 3 2 2 1 1 1 1 2 2 1 2 2 1 2 2 3 1 2 2 3 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32245 PF02536 mTERF 1.70E-41 No_clan Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00224 Csa_Chr07 FPKM 0.0 0.0 0.0 0.93427 3.683758 5.463088 2.482701 3.345915 4.279416 4.696342