Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00227 ATGATCTTCAAAAATAGAAAAAGTTCACTTTTGAGCAAAATATTCCCATTGGAACTTCTTCCTTGCAGTACCTGTACATATGTAAGAGAGGAAGATCAGAAAATGGACGAGAAGAGAGAAATCGAAGAGCCACCAAGCTGCAATTTCTCATCTTCTGCTCATCAAATCAACCCTACAGAGAAGAGGACACCAATTGAAGTCTTTCAAGTGCCTGCAAGTTCTGGAGATCGCCAGTCCAAGGGTGAAGCCACTCATGAGCCAGATGAGCCAAAATCATCCCTCTCTTCCTTTCGTCCTGCTGCCAGCATGGAAGCATCCAAAAAGTGGATGGCATTTGAAAGTGAAAACTTTGATATAACAAAGACATACACAAAGAACTTCGGTGGTAGCTTTAGGTCATATTCAACTAAAATATTGGAAACAAACATGACAAAAAGGACTGCAGAGGAGAACAAGATTGATCGTTTATCATCGCTGCAACTGACGTATGTTATCTCAGATGCAACAAAACCAGATTACCCTATCATGTTTGCCAGCAATAGGTTCTTGGCTATGACCGGATATACATTGGACGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCGGAGACAGATAAGAATGAAGTAGCTAAAATACGACATGCAATTAGAAAAGGGAATAGCTACTGTGGCAAGCTCTTAAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAAGACTCCCATGGCAGAATCATCAGATTTATTGGAATGCAGGTTGAGATCGCCAAAGACATAGAAGGAAAAGAGAAAACTGTGAGGTCCATGTCCATTACAGAGGTTCAAGCTGAGAGGGCAATTAGGTCCATTGTGGAGGTTGACATTGTGAAAAGTCTTAGATCTCACTGGCATGATGCTGATACAAAGCACCAAGAGCCAGAAAAGACTAATGCTGATTATGCTTCATCCAAGGCTCTGGATAAGAATTTTACCACAGCTGATAACCAAAAGGCTCGGTTCAAAGAAAGGACCTTAGGTTCTGCAGTAGAACGTGAAGAAAAGACAGTAGTTGAGACATATTTATTCAAGCCTAAGGATGGTGATCATGTTGCTAAAAGAGAAAGGGATATACGCCAAGGAACTGAGTTGGCTACTACATTGGAACGGATCAAGAAGATATTTTTTATCACTAATCCAAGACTTCCTGATAATCCTATTATATTTGCATCTCATAGGTTTCTTGATTCCACAGAATACACGCTTGAAGAAGTTCTGGGGAGAAACTTTTGTTTTCTTCAGGGACCTGAAACAGATCAAGCAACTGTCTCAAAGATAAACGATGCAATTGAAGAGCAGAGAGAAATCACTCTTCAGATCATCAACTACACAAAGAGTGGAAAAAAGTTCTCTAATTTATTTCACTTGCAACCCATGTGTGATCAAATGAAGGGTGAGCTTCAATATTTCATTGGTGTGCAAATTCATCAAAAACCTTCAAGAAACCGGCTTTTTGATCGGACAGAGCATGGAAGTGCAAAGCTAGCCAAAGCTGTAGCCGAAAATGTTGTCAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAACGAACTTCTGGGCAATCTACTGTCAGCCGGTCTTGCCAAGGCCTCACAAGAAGTACAGCCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAATGTTGGACTCCATCATTTCAAGCCAATAAAACCTCTGGGTTTTGGAGATATTGGCAGTGTTCATTTGGTAGAACTGAAAGGAACAGGTGAACTCTTTGCTATGAAGGCTATAGAGAAGTCGGTAATATTAAATCGCAACAAGGTTCACCGAGCATGCATGGAAAGGGAAATCATATCACTTTTGGATCATCCTTTCATGCCAACTCTATACTCTTCATTTCAGACGTCTACACACATTTTTCTGATTATGGACTTCTGTCCCGGTGGAGAGTTATTTACCTTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAGTACCTTCACTGTTTAGGTATTATCTACAGAGACCTAAAACCTGAAAACATTCTACTCCAGAAAGACGGACATATCATTCTCGCTGATTTTGATTTATCGTTTAAGACGTCTAACATACAAACCATAGAATCTTCACCCCCAAGAAAGAAGACACGTAGGCACAAATCATTGCCGATGTTCGTTGTTGAACCTATGGTGGAACTGAATTCATTCATTGGAACTGAAGAGTACATTGCCCCAGAGATCATAATGGGTGCAGGCCATGGTAGTTCTATTGACTGGTGGACTCTTGGTATCTTATTGTATGAAATGCTCTATGGTCGCACACCCTTTAAAGGCAAAAACAGGAATAAGACTTTTGCCAATATTTTGTTCAAGGACTTGACCTTCCCCATTAGTATTCAGGTAAGTCTTGCAGCAAAACAACTGATTGATGCACTACTACAAAGAGACCCGGCACGTCGTCTAGGATCAAGGACTGGTTCCGATGAAATCAAACGACATCCATTTTTCCGTCAAGTAAATTGGCCTAAAATTCGAACCATGACACCACCATCGCCAGAAGTAGCCCTTCAAATAATTGAGAGAGACCCAAAAGCCAATGATTTGAACTGGGAAGATGGAATGCTCAGCCATTCAATGGGTTCTGCTAATATTTTCTGA 2742 41.14 MIFKNRKSSLLSKIFPLELLPCSTCTYVREEDQKMDEKREIEEPPSCNFSSSAHQINPTEKRTPIEVFQVPASSGDRQSKGEATHEPDEPKSSLSSFRPAASMEASKKWMAFESENFDITKTYTKNFGGSFRSYSTKILETNMTKRTAEENKIDRLSSLQLTYVISDATKPDYPIMFASNRFLAMTGYTLDEVIGRNCRFLQGPETDKNEVAKIRHAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGRIIRFIGMQVEIAKDIEGKEKTVRSMSITEVQAERAIRSIVEVDIVKSLRSHWHDADTKHQEPEKTNADYASSKALDKNFTTADNQKARFKERTLGSAVEREEKTVVETYLFKPKDGDHVAKRERDIRQGTELATTLERIKKIFFITNPRLPDNPIIFASHRFLDSTEYTLEEVLGRNFCFLQGPETDQATVSKINDAIEEQREITLQIINYTKSGKKFSNLFHLQPMCDQMKGELQYFIGVQIHQKPSRNRLFDRTEHGSAKLAKAVAENVVKAVRELPDANLKPTNFWAIYCQPVLPRPHKKYSPSWIAIQKITSHGENVGLHHFKPIKPLGFGDIGSVHLVELKGTGELFAMKAIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTSTHIFLIMDFCPGGELFTFLDKQPMKMFKEEAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIILADFDLSFKTSNIQTIESSPPRKKTRRHKSLPMFVVEPMVELNSFIGTEEYIAPEIIMGAGHGSSIDWWTLGILLYEMLYGRTPFKGKNRNKTFANILFKDLTFPISIQVSLAAKQLIDALLQRDPARRLGSRTGSDEIKRHPFFRQVNWPKIRTMTPPSPEVALQIIERDPKANDLNWEDGMLSHSMGSANIF* 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1788691 1799558 - CsaV3_7G002270.1 Csa07g00227 535790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00227 913 MobiDBLite consensus disorder prediction 45 59 - -
Csa07g00227 913 Pfam PAS domain 169 264 IPR000014 -
Csa07g00227 913 Pfam PAS domain 403 495 IPR000014 -
Csa07g00227 913 Pfam Protein kinase domain 581 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00227 913 SMART pac_2 458 500 IPR001610 -
Csa07g00227 913 SMART pac_2 225 267 IPR001610 -
Csa07g00227 913 Gene3D Transferase(Phosphotransferase) domain 1 663 878 - -
Csa07g00227 913 TIGRFAM sensory_box: PAS domain S-box protein 175 266 IPR000014 -
Csa07g00227 913 PANTHER BNAC03G12530D PROTEIN 143 907 - -
Csa07g00227 913 ProSiteProfiles Protein kinase domain profile. 579 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00227 913 SMART pas_2 383 452 IPR000014 -
Csa07g00227 913 SMART pas_2 150 219 IPR000014 -
Csa07g00227 913 CDD STKc_phototropin_like 577 878 - -
Csa07g00227 913 SUPERFAMILY Protein kinase-like (PK-like) 557 892 IPR011009 -
Csa07g00227 913 ProSiteProfiles PAC domain profile. 222 276 IPR000700 -
Csa07g00227 913 Gene3D PAS domain 163 330 - -
Csa07g00227 913 CDD PAS 175 264 IPR000014 -
Csa07g00227 913 SUPERFAMILY PYP-like sensor domain (PAS domain) 396 495 IPR035965 -
Csa07g00227 913 SUPERFAMILY PYP-like sensor domain (PAS domain) 169 262 IPR035965 -
Csa07g00227 913 Gene3D PAS domain 369 531 - -
Csa07g00227 913 MobiDBLite consensus disorder prediction 32 98 - -
Csa07g00227 913 SMART serkin_6 579 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00227 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Csa07g00227 913 Gene3D Phosphorylase Kinase; domain 1 578 662 - -
Csa07g00227 913 PANTHER FLIPPASE KINASE 1-RELATED 143 907 - -
Csa07g00227 913 ProSiteProfiles PAS repeat profile. 381 454 IPR000014 -
Csa07g00227 913 ProSiteProfiles PAS repeat profile. 148 221 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01697 Csa-Chr6:14924855 Csa07g00227 Csa-Chr7:1788691 1.06E-16 dispersed
Csa07g00227 Csa-Chr7:1788691 Csa03g03977 Csa-Chr3:34781972 8.18E-107 dispersed
Csa01g00192 Csa-Chr1:1256453 Csa07g00227 Csa-Chr7:1788691 1.23E-64 transposed
Csa03g01408 Csa-Chr3:10568545 Csa07g00227 Csa-Chr7:1788691 8.67E-37 transposed
Csa05g01113 Csa-Chr5:11354924 Csa07g00227 Csa-Chr7:1788691 7.12E-09 transposed
Csa05g02417 Csa-Chr5:26200616 Csa07g00227 Csa-Chr7:1788691 5.30E-51 transposed
Csa05g02756 Csa-Chr5:28282064 Csa07g00227 Csa-Chr7:1788691 3.95E-55 transposed
Csa06g00994 Csa-Chr6:8056924 Csa07g00227 Csa-Chr7:1788691 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78460 PF00069 Pkinase 1.50E-62 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00227 K20715 - csv:101213364 1782.69