Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00228 ATGGACACTGGAGGCAATTCTCTTCCTTCTGGGGCTGATGGGGTGAAGAGAAAAGTGTCGTATTTCTATGACCCTGAGATTGGCAATTACTATTACGGTCAGGGTCATCCAATGAAGCCACACCGTATTAGGATGACCCATGCTCTTCTTGCTCACTATGGATTGCTTCAGCATATGCAGGTCTTTAAACCCACCCTTGCCAAGGACAAGGATCTTTGTCGTTTCCATGCTGATGACTACGTTTCATTCTTGAGAAATATTACGCCTGAGACTCAGCAGGATCAGCTAAGGCAGCTCAAGCGTTTTAATGTTGGTGAAGATTGTCCTGTGTTTGATGGTCTTTACTCTTTCTGCCAAACATATGCCGGTGGCTCAGTTGGTGGCGCTGTCAAATTAAACCACAACCAGTGTGACATTGCTGTTAATTGGGCTGGTGGCCTACACCATGCTAAGAAGTGCGAGGCTTCTGGATTTTGCTATGTCAATGATATTGTCTTGGCTATTTTAGAGCTTCTTAAACAGCATGAGCGTGTTTTGTATGTTGATATTGATATCCATCATGGAGATGGTGTAGAAGAGGCTTTTTATACCACTGACAGGGTCATGACAGTTTCGTTCCACAAATTTGGTGATTATTTTCCTGGTACTGGGGATATTCGTGATATCGGCTATGGCAAAGGGAAGTATTATTCCCTCAATGTTCCTTTGGATGATGGAATTGATGATGAAAGTTATCATTCTCTATTTAAACCTATAATGGGGAAGGTTATGGAAATCTTTAAGCCCGGTGCTGTAGTTCTTCAATGTGGTGCTGACTCTTTGTCTGGGGATAGGTTGGGATGTTTCAATCTTTCAATCAAAGGTCATGCTGAATGTGTTAAATATATGAGATCATTCAATGTTCCCCTTTTACTGCTTGGTGGCGGAGGCTATACTATTCGAAATGTCGCTCGATGCTGGTGCTACGAGACGGGAGTAGCTCTTGGAATGGACGTCGACAACAAAATGCCACAGCATGAGTACTATGAGTATTTTGGACCTGATTATACTCTACACGTTGCACCTAGTAATATGGAAAACAAAAATTCCCGCAAAATATTGGAAGACATAAGAGTAAATCTTCTTGGTTATCTCTCAAAGCTTCAACATGCCCCCAGTGTTCAATTTCAAGAAAGGCCTCCTGATACTGAATTCCAAGAGGCGGACGAGGATGATGATAATGGAGACGAGAGATGGGATGAAGATTCTGCCATGGACATCGATTGTGACAGAAAGCAATTGCCGAGCCGGGTGAAAGCAGAAAGTTATGACACTGAAATTAAAATGGAAGATGTTGCTGAGACCAAAGGTTTCGAAAGACCAGCAACTGGAACGTGA 1377 42.85 MDTGGNSLPSGADGVKRKVSYFYDPEIGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVFKPTLAKDKDLCRFHADDYVSFLRNITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHNQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGIDDESYHSLFKPIMGKVMEIFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGMDVDNKMPQHEYYEYFGPDYTLHVAPSNMENKNSRKILEDIRVNLLGYLSKLQHAPSVQFQERPPDTEFQEADEDDDNGDERWDEDSAMDIDCDRKQLPSRVKAESYDTEIKMEDVAETKGFERPATGT* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1802629 1808133 + CsaV3_7G002280.1 Csa07g00228 535791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00228 458 Pfam Histone deacetylase domain 36 324 IPR023801 -
Csa07g00228 458 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Csa07g00228 458 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Csa07g00228 458 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Csa07g00228 458 MobiDBLite consensus disorder prediction 417 437 - -
Csa07g00228 458 MobiDBLite consensus disorder prediction 388 437 - -
Csa07g00228 458 PANTHER HISTONE DEACETYLASE 19 3 447 - -
Csa07g00228 458 PANTHER HISTONE DEACETYLASE 3 447 - -
Csa07g00228 458 PIRSF HDAC_I_euk 4 454 IPR003084 GO:0004407|GO:0016575
Csa07g00228 458 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Csa07g00228 458 MobiDBLite consensus disorder prediction 397 416 - -
Csa07g00228 458 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
Csa07g00228 458 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Csa07g00228 458 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Csa07g00228 458 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Csa07g00228 458 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Csa07g00228 458 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Csa07g00228 458 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Csa07g00228 458 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00228 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - csv:101217287 950.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00119 Csa-Chr1:677610 Csa07g00228 Csa-Chr7:1802629 0 dispersed
Csa01g03237 Csa-Chr1:28511607 Csa07g00228 Csa-Chr7:1802629 5.76E-22 dispersed
Csa06g01285 Csa-Chr6:10752750 Csa07g00228 Csa-Chr7:1802629 2.36E-176 dispersed
Csa01g00287 Csa-Chr1:1800473 Csa07g00228 Csa-Chr7:1802629 4.44E-28 transposed
Csa04g02531 Csa-Chr4:25048093 Csa07g00228 Csa-Chr7:1802629 1.51E-14 transposed
Csa06g00989 Csa-Chr6:8019087 Csa07g00228 Csa-Chr7:1802629 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g328 . . . . . Bpe12g00163 . . . Cmo11g01384 Cma02g00311 Cma20g00695 Car02g00192 . . Cpe04g00295 . Bhi05g01087 . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . . . . Csa07g00228 . Cme01g00073 Blo04g00616 Blo13g00456 . . Bpe15g00768 . Bma03g00653 Bma08g00825 . Cmo02g00305 Cmo20g00687 . . . . . Cpe05g01328 . . . . . . . Cla02g01045 Cam02g1113 Cec02g1118 Cco02g1152 Clacu02g1099 Cmu02g1059 Cre02g1367 Lsi11g01321 . Chy01g00080 Cme11g01011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00228 Csa_Chr07 FPKM 0.0 0.0 1.871564 1.395545 0.0 0.0 0.0 0.0 0.159024 0.0