Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00235 ATGGGTTACATATGTGATTTCTGTGCGCAACAAAGGTCGATTGTGTATTGTCGATCTGATGCTGCAGCTTTGTGCTTATCTTGTGACCGAAATGTTCACTCTGCTAATGCCTTGTCAAGGCGCCACTCGAGAACATTGTTGTGTGACCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAACATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACGGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCCCTTCTGGTAGCGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCTGTAAATGCCTGGGGCCCAAATGATAAAGCTGGTCAAAATGTTTCTGGTGTAGATGAAACCAATGAGTTCTCAAGTGTGGATAAATCAATTTGGTATGGATCGTCTTCAATGCCTCACATTATGGACCAACCGATTACTATGGATGCAACTTCACCCAAGTTGCACTATCCTGGAAGAAAAGGTCCTGAAATCGATATCGAAGATGATCTATATGAAAGTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTGTCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGCTTGTTCAGGATGAAAAACTTATCTGCCGCTAAATCTGGCTGCCCTGGTGGGGCTGCTGCAGAGGGGGCATCAGTCAGTTTTGTTAATAATGTAATGCAGCCTGCAAACAGTAATGCAGCATCGGCAGATTCTGTTATGAGTGCGAAGACTGAACCAGTTCTTTGTTATAACAATAAGCAAGAGCACTCCGGCCTATCGTTCTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAGCCGCCATGGTGTTCTATGGCCACTGAGACTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCTGATACTCGAAGACGTGTCAAGGGGCGCTTTGTCAAAGCCGGAGAAGCTTATGACTATGATCCATTGAGTCAAACCAGAAGCTACTGA 1224 43.87 MGYICDFCAQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSGSDACEQELGLMSIAENSAVNAWGPNDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPHIMDQPITMDATSPKLHYPGRKGPEIDIEDDLYESLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRMKNLSAAKSGCPGGAAAEGASVSFVNNVMQPANSNAASADSVMSAKTEPVLCYNNKQEHSGLSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSMATETSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1863318 1866691 + CsaV3_7G002350.1 Csa07g00235 535798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00235 407 CDD Bbox1_BBX-like 4 47 - -
Csa07g00235 407 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Csa07g00235 407 Pfam CCT motif 350 392 IPR010402 GO:0005515
Csa07g00235 407 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Csa07g00235 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 407 - -
Csa07g00235 407 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa07g00235 407 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa07g00235 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00235 - - - csv:101216326 816.994
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa06g00975 Csa07g00235 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02703 Csa-Chr2:23567212 Csa07g00235 Csa-Chr7:1863318 8.15E-29 dispersed
Csa04g00287 Csa-Chr4:1790472 Csa07g00235 Csa-Chr7:1863318 1.74E-08 dispersed
Csa05g02652 Csa-Chr5:27519572 Csa07g00235 Csa-Chr7:1863318 1.65E-24 dispersed
Csa07g00235 Csa-Chr7:1863318 Csa01g02115 Csa-Chr1:18437986 5.84E-10 dispersed
Csa06g00975 Csa-Chr6:7889202 Csa07g00235 Csa-Chr7:1863318 2.70E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g737 . Blo15g00433 . . Bpe12g00169 Bpe15g00764 Bma03g00658 Bma08g00690 . Cmo19g00853 Cma02g00242 Cma20g00703 . . . Cpe15g00673 Cpe04g00659 Bhi05g01505 . . Lac12g0415 Hepe02g0327 . . Cla02g00307 Cam02g0316 Cec02g0317 Cco02g0319 Clacu02g0307 Cmu02g0306 Cre02g0639 Cone3ag1271 . Cone8ag1358 Cone12ag1303 . Csa07g00235 Chy11g00733 Cme01g00573 . Blo13g00448 Bda14g00661 . . Bpe07g00668 Bma02g01294 Bma12g00873 . Cmo02g00244 . . Cma19g00837 Car11g01444 Car19g00649 . Cpe05g01383 Bhi10g01288 . . . Hepe08g0372 . . . . . . . . . Lsi11g01330 Csa06g00975 Chy01g00545 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02445 . 6 338 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 1.4e-42 170.6
Csa02g02445 . 1 338 C2C2-CO-like Transcription Factor Family AT5G24930 61.0 8.2e-83 304.3
Csa01g02115 CCT 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.2e-57 220.7
Csa01g02115 CCT 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 52.2 4.3e-68 255.4
Csa02g02445 . 2 338 C2C2-CO-like Transcription Factor Family AT5G57660 50.3 3.0e-53 206.1
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.2e-90 328.9
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 3.5e-89 325.5
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 1.5e-87 320.1
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.6e-86 315.5
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 1.5e-87 320.1
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.6e-86 315.5
Csa07g00027 CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 53.7 3.5e-48 189.1
Csa02g01300 CCT,ECH 1 173 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 6.2e-45 178.3
Csa04g00821 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.2 1.4e-78 290.0
Csa04g00581 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 60.5 2.6e-55 211.8
Csa06g03304 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.1 2.2e-49 192.2
Csa04g00581 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 3.0e-57 218.4
Csa06g03304 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.0 6.7e-49 190.7
Csa07g00027 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 54.8 3.8e-52 201.8
Csa02g02104 . 1 220 C2C2-CO-like Transcription Factor Family AT4G39070 50.7 1.8e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32247 PF06203 CCT 2.70E-16 CL0281 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00235 Csa_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0