Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00235 ATGGGTTACATATGTGATTTCTGTGCGCAACAAAGGTCGATTGTGTATTGTCGATCTGATGCTGCAGCTTTGTGCTTATCTTGTGACCGAAATGTTCACTCTGCTAATGCCTTGTCAAGGCGCCACTCGAGAACATTGTTGTGTGACCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAACATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACGGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCCCTTCTGGTAGCGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCTGTAAATGCCTGGGGCCCAAATGATAAAGCTGGTCAAAATGTTTCTGGTGTAGATGAAACCAATGAGTTCTCAAGTGTGGATAAATCAATTTGGTATGGATCGTCTTCAATGCCTCACATTATGGACCAACCGATTACTATGGATGCAACTTCACCCAAGTTGCACTATCCTGGAAGAAAAGGTCCTGAAATCGATATCGAAGATGATCTATATGAAAGTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTGTCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGCTTGTTCAGGATGAAAAACTTATCTGCCGCTAAATCTGGCTGCCCTGGTGGGGCTGCTGCAGAGGGGGCATCAGTCAGTTTTGTTAATAATGTAATGCAGCCTGCAAACAGTAATGCAGCATCGGCAGATTCTGTTATGAGTGCGAAGACTGAACCAGTTCTTTGTTATAACAATAAGCAAGAGCACTCCGGCCTATCGTTCTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAGCCGCCATGGTGTTCTATGGCCACTGAGACTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCTGATACTCGAAGACGTGTCAAGGGGCGCTTTGTCAAAGCCGGAGAAGCTTATGACTATGATCCATTGAGTCAAACCAGAAGCTACTGA 1224 43.87 MGYICDFCAQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSGSDACEQELGLMSIAENSAVNAWGPNDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPHIMDQPITMDATSPKLHYPGRKGPEIDIEDDLYESLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRMKNLSAAKSGCPGGAAAEGASVSFVNNVMQPANSNAASADSVMSAKTEPVLCYNNKQEHSGLSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSMATETSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1863318 1866691 + CsaV3_7G002350.1 Csa07g00235 535798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00235 407 CDD Bbox1_BBX-like 4 47 - -
Csa07g00235 407 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Csa07g00235 407 Pfam CCT motif 350 392 IPR010402 GO:0005515
Csa07g00235 407 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Csa07g00235 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 407 - -
Csa07g00235 407 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa07g00235 407 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa07g00235 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 407 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g00975 Csa07g00235 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02703 Csa-Chr2:23567212 Csa07g00235 Csa-Chr7:1863318 8.15E-29 dispersed
Csa04g00287 Csa-Chr4:1790472 Csa07g00235 Csa-Chr7:1863318 1.74E-08 dispersed
Csa05g02652 Csa-Chr5:27519572 Csa07g00235 Csa-Chr7:1863318 1.65E-24 dispersed
Csa07g00235 Csa-Chr7:1863318 Csa01g02115 Csa-Chr1:18437986 5.84E-10 dispersed
Csa06g00975 Csa-Chr6:7889202 Csa07g00235 Csa-Chr7:1863318 2.70E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32247 PF06203 CCT 2.70E-16 CL0281 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00235 - - csv:101216326 816.994