Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00239 ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCTATTTCCATGCTCAAGTGCTTTGTACGTTTAATCCTTCACATGGTAGGAATCCATCTCTCATGGTCATCAACTGTAGTCCCATCAATAGATTCCTTTGGAAGTTCCTCAGAGTTGGGAGATCCCAATTTTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGAAACCGATATCCAAGGATTAGATTTGATAAAGTACAGAGTTCAGGATGCCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCCATAAATCACTTATTTTGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAATGGCTGGACTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGAGAAATTTTGCTTTTGGTAA 465 42.15 MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIHLSWSSTVVPSIDSFGSSSELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLFCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW* 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1876800 1877264 + CsaV3_7G002390.1 Csa07g00239 535802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00239 154 PANTHER - 1 154 IPR044249 -
Csa07g00239 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Csa07g00239 154 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 154 - -
Csa07g00239 154 SMART ring_2 99 140 IPR001841 -
Csa07g00239 154 Pfam Ring finger domain 98 141 IPR001841 -
Csa07g00239 154 SUPERFAMILY RING/U-box 93 146 - -
Csa07g00239 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 146 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g00974 Csa07g00239 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00239 Csa-Chr7:1876800 Csa03g01220 Csa-Chr3:9415220 1.87E-09 dispersed
Csa07g00239 Csa-Chr7:1876800 Csa07g00240 Csa-Chr7:1884966 1.62E-97 tandem
Csa02g00206 Csa-Chr2:1410319 Csa07g00239 Csa-Chr7:1876800 6.21E-06 transposed
Csa06g00974 Csa-Chr6:7875193 Csa07g00239 Csa-Chr7:1876800 2.48E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00239 K16285 - csv:101215605 331.643