Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00240 ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGA 465 44.95 MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW* 155
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 1884966 1885430 + CsaV3_7G002400.1 Csa07g00240 535803
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00240 154 SMART ring_2 99 140 IPR001841 -
Csa07g00240 154 Pfam Ring finger domain 98 141 IPR001841 -
Csa07g00240 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Csa07g00240 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 146 IPR013083 -
Csa07g00240 154 SUPERFAMILY RING/U-box 93 146 - -
Csa07g00240 154 PANTHER - 1 154 IPR044249 -
Csa07g00240 154 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 154 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00974 Csa-Chr6:7875193 Csa07g00240 Csa-Chr7:1884966 4.77E-69 dispersed
Csa07g00240 Csa-Chr7:1884966 Csa05g00260 Csa-Chr5:1582398 3.61E-11 dispersed
Csa07g00239 Csa-Chr7:1876800 Csa07g00240 Csa-Chr7:1884966 1.62E-97 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00240 K16285 - csv:101215843 332.798