Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa07g00240 | ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGA | 465 | 44.95 | MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW* | 155 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1884966 | 1885430 | + | CsaV3_7G002400.1 | Csa07g00240 | 535803 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa07g00240 | 154 | SMART | ring_2 | 99 | 140 | IPR001841 | - | |
| Csa07g00240 | 154 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - | |
| Csa07g00240 | 154 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
| Csa07g00240 | 154 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 146 | IPR013083 | - | |
| Csa07g00240 | 154 | SUPERFAMILY | RING/U-box | 93 | 146 | - | - | |
| Csa07g00240 | 154 | PANTHER | - | 1 | 154 | IPR044249 | - | |
| Csa07g00240 | 154 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 154 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa06g00974 | Csa-Chr6:7875193 | Csa07g00240 | Csa-Chr7:1884966 | 4.77E-69 | dispersed | |
| Csa07g00240 | Csa-Chr7:1884966 | Csa05g00260 | Csa-Chr5:1582398 | 3.61E-11 | dispersed | |
| Csa07g00239 | Csa-Chr7:1876800 | Csa07g00240 | Csa-Chr7:1884966 | 1.62E-97 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa07g00240 | K16285 | - | csv:101215843 | 332.798 |