Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00248 ATGCCCCGTCCCTTCCCCCTCGCCACTCTGGCTCTCCCTCTCCTCCTCCTCCTCATCTTCTCCCCCTCCTCCGCCGACGCTCACAACATCACTAGAATCCTCGCCAAACACCCTGAGTTCAGCACCTTCAACCACTACCTCACAATCACCCACCTCGCTGGCGAAATCAACCGCCGTCTTACCATTACTGTCCTCGCCTTAGACAACTCTGCCATGTCCGCTCTTCTCGACAAGCATTTCTCCGTCGGCACCATCAAGAATGTGCTCTCGCTTCATGTTCTTGTTGATTACTACGGTGCTAAAAAGCTTCATCAGCTTTCTAAAGGAACTACGCTCTCTTCTACTCTGTTTCAGGCCACCGGTTCCGCTACTGGTACTTCTGGATATGTTAATATCACTAATATGAGAGGCGGTAAGGTTGGATTTGGATCCGAGGATAACGGCGGCGATCTCAATTCCTTCTATGTTAAATCGGTCGTGGAAATGCCTTACAATATCTCCATCTTGCAGATCAGTAAGGTTATAACATCCGCCGACGCCGAGGCTCCAACGGCGGCGCCGGTCAGTTTGAATCTGACGGAGGTCCTGCCAAAGCAAGGTTGCAAAGCCTTCTCTGATCTCTTAATAGCTGCTGGCGCCATTGAAACATATCAATCGAACGTCGATGGTGGACTAACGATGTTTTGTCCAACGGAAGACGCACTCAATGCATTTCTTCCCAAGTACAAGAATCTCACGGCGGCGCATAAAGTATCGTTGCTATTGTACCACGGTATGCCGATTTACTTATCGTTGCAGATGTTCAAATCGAACAACGGCGTCGTCAGCACGTTAGCCACAGACGGCGGCGCCAAGTACGATTTCGTCATCAAGACCGACGGCGAGGACGTCATGGTAAAGACGAAGGTTGTGACGTCGACAGTGACAGCGACGCTGATAGATTCGGAGCCGTTGATAGTGTATGAGGTCGATAAGGTGTTGCAGCCGAAGGAGCTTTTCAAGGCAGTACCGGAGGAGGAAGAGGAGGCTCCAGCACCGAAATCATCGCCGAAGAAGAAGAAGACGAAGGCACCATCGCCTAAGGCGTCGGACGGAGAGGAGTCCGAGGATGCAGACTCCCCAATTGGGTCGGATGAGTCGGACGGAGATCCGGCGGATCAGACATCAGAAAAAGATGGAGCGTTTGGAAGGAACGGTGAGAGATCGATGGCGGTGGTGGTGATGTTGAGTTTGTGGTTGGGTGTTTTGCTCGTATGA 1257 51.71 MPRPFPLATLALPLLLLLIFSPSSADAHNITRILAKHPEFSTFNHYLTITHLAGEINRRLTITVLALDNSAMSALLDKHFSVGTIKNVLSLHVLVDYYGAKKLHQLSKGTTLSSTLFQATGSATGTSGYVNITNMRGGKVGFGSEDNGGDLNSFYVKSVVEMPYNISILQISKVITSADAEAPTAAPVSLNLTEVLPKQGCKAFSDLLIAAGAIETYQSNVDGGLTMFCPTEDALNAFLPKYKNLTAAHKVSLLLYHGMPIYLSLQMFKSNNGVVSTLATDGGAKYDFVIKTDGEDVMVKTKVVTSTVTATLIDSEPLIVYEVDKVLQPKELFKAVPEEEEEAPAPKSSPKKKKTKAPSPKASDGEESEDADSPIGSDESDGDPADQTSEKDGAFGRNGERSMAVVVMLSLWLGVLLV* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1955435 1958028 - CsaV3_7G002480.1 Csa07g00248 535811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00248 418 Gene3D FAS1 domain 194 330 IPR036378 -
Csa07g00248 418 SUPERFAMILY FAS1 domain 33 176 IPR036378 -
Csa07g00248 418 MobiDBLite consensus disorder prediction 369 383 - -
Csa07g00248 418 SUPERFAMILY FAS1 domain 199 330 IPR036378 -
Csa07g00248 418 SMART fasc_3 63 178 IPR000782 -
Csa07g00248 418 SMART fasc_3 226 330 IPR000782 -
Csa07g00248 418 Gene3D FAS1 domain 26 175 IPR036378 -
Csa07g00248 418 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 9 412 - -
Csa07g00248 418 ProSiteProfiles FAS1/BIgH3 domain profile. 188 327 IPR000782 -
Csa07g00248 418 MobiDBLite consensus disorder prediction 336 399 - -
Csa07g00248 418 Pfam Fasciclin domain 201 329 IPR000782 -
Csa07g00248 418 Pfam Fasciclin domain 38 114 IPR000782 -
Csa07g00248 418 ProSiteProfiles FAS1/BIgH3 domain profile. 27 175 IPR000782 -
Csa07g00248 418 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 9 412 IPR033254 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g00967 Csa07g00248 CCT
Csa06g00967 Csa07g00248 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00248 Csa-Chr7:1955435 Csa07g00834 Csa-Chr7:6043851 4.58E-159 dispersed
Csa07g00248 Csa-Chr7:1955435 Csa03g04390 Csa-Chr3:38320956 1.59E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00248 - - csv:101214167 738.028